Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,693,824 – 17,693,919 |
Length | 95 |
Max. P | 0.593017 |
Location | 17,693,824 – 17,693,919 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.87 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -19.79 |
Energy contribution | -20.07 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.17 |
Mean z-score | -1.09 |
Structure conservation index | 0.79 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17693824 95 + 20766785 -GGUCCAA--AUCCCA--------CGUCCAUGUAUCCCUGGAGCUCCUCCUCGUACGGCGGCCAGAUUCCCAGUGCCGCCAACGUCCGGGUAAAUACUCCGC--------CAAU------ -((.....--..((((--------(((....((((....((((...))))..))))(((((((.........).)))))).))))..)))........))..--------....------ ( -26.46) >DroPse_CAF1 2414 120 + 1 CCAACCAACAAACACUCAUCAUAACCACUAUGUACCCCUGGAGCUCAUCCUCGUACAGCGGCCAAGCGCCCAAUCCUGCUCAGAAUAGGGUAAAUAACUCACACUCACUCCAACCACUAA ..............................(((((....(((.....)))..)))))((......))((((.((.((....)).)).))))............................. ( -15.60) >DroSec_CAF1 3446 95 + 1 -GGUCCAA--AACCCA--------CGUCCAUGUAUCCCUGGAGCUCCUCCUCGUACGGCGGCCAGAUUCCCAGUGCCGCCAACGCCCGGGUAAAUACUCCGC--------CAAU------ -((.....--.((((.--------.......((((....((((...))))..))))(((((((.........).)))))).......)))).......))..--------....------ ( -26.02) >DroSim_CAF1 2625 95 + 1 -GGUCCAA--AACCCA--------CGUCCAUGUAUCCCUGGAGCUCCUCCUCGUACGGCGGCCAGAUUCCCAGUGCCGCCAACGCCCGGGUAAAUACUCCGC--------CAAU------ -((.....--.((((.--------.......((((....((((...))))..))))(((((((.........).)))))).......)))).......))..--------....------ ( -26.02) >DroEre_CAF1 3254 95 + 1 -GGUCCAA--AACCCA--------CGUCCAUGUAUCCCUGGAGCUCCUCCUCGUACGGCGGGCACAUUCCCAGUGCCGCCAACGUCCGGGUAAAUACUCUAC--------CAAU------ -(((....--.(((((--------(((....((((....((((...))))..))))(((((.(((.......)))))))).))))..)))).........))--------)...------ ( -28.14) >DroYak_CAF1 3119 95 + 1 -GGUCCAA--AACCCA--------CGUCCAUGUAUCCCUGGAGCUCCUCCUCGUACGGCGGCCAGGUUCCCAGUGCCGCCAACGUCCGGGUAAAUACUCCAC--------GAAU------ -((.....--.(((((--------(((....((((....((((...))))..))))(((((((.((...)).).)))))).))))..)))).......))..--------....------ ( -28.82) >consensus _GGUCCAA__AACCCA________CGUCCAUGUAUCCCUGGAGCUCCUCCUCGUACGGCGGCCAGAUUCCCAGUGCCGCCAACGUCCGGGUAAAUACUCCAC________CAAU______ ...........((((................((((....((((...))))..))))((((((............)))))).......))))............................. (-19.79 = -20.07 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:25 2006