Locus 5544

Sequence ID 2R_DroMel_CAF1
Location 17,692,978 – 17,693,098
Length 120
Max. P 0.993031
window8895

overview

Window 5

Location 17,692,978 – 17,693,098
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -41.80
Consensus MFE -38.82
Energy contribution -38.50
Covariance contribution -0.32
Combinations/Pair 1.11
Mean z-score -1.74
Structure conservation index 0.93
SVM decision value 2.37
SVM RNA-class probability 0.993031
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17692978 120 - 20766785
CCCAGUUGGAGAUUGCUCACGCCAUCCUUCACAGAGCUGGCGAAGACCACCUCCUCCGUCUCCAUGUCCUGCAAGCAAGUUGGCUCCUCCAUGGAGGUGAACUGCAGCUGUCCCGACUUU
...((((((.(((.((((((((((..(((....))).))))).....(((((((.......(((...(.((....)).).))).........)))))))...)).))).))))))))).. ( -36.89)
>DroSec_CAF1 2600 120 - 1
CCUAGUUGGAGAUUGCUCACACCAUCCUUCACGGAGCUGGCGAAGACCACCUCCUCCGUCUCCAUGUCCUGCAAGCAAGUUGGCUCCUCCAGGGAGGUGAACUGCAGCUGUCCCGACUUC
...((((((.(((.(((((((((.(((((...(((((..(((.((((..........)))).).(((.......))).))..)))))...)))))))))...)).))).))))))))).. ( -42.40)
>DroSim_CAF1 1797 120 - 1
CCCAGUUGGAGAUUGCUCACGCCAUCCUUCACGGAGCUGGCGAAGACCACCUCCUCCGUCUCCAUGUCCUGCAAGCAAGUUGGCUCCUCCAGGGAGGUGAACUGCAGCUGUCCCGACUUU
...((((((.(((.(((((((((.(((((...(((((..(((.((((..........)))).).(((.......))).))..)))))...)))))))))...)).))).))))))))).. ( -42.10)
>DroEre_CAF1 2418 120 - 1
CCAAGUUGGAGAUUGCUCACGCCAUCCUUUAUGGAGCGGGCGAAGACCACCUCCUGCGUCUCCAUGUCCUGCAAACAAGUUGGCUCCACCAGGGAGGUGAACUGCAGCUGUCCCGACUUU
..(((((((.(((.(((((((((.(((((..(((((((((((.((((((.....)).))))...)))))..(((.....)))))))))..)))))))))...)).))).)))))))))). ( -45.80)
>DroYak_CAF1 2297 120 - 1
CCCAGUUGGAGAUUGCUUACGCCAUCCUUAAUGGAGCGGGCGAAGAUCACCUCUUCCGUCUCCAUGUCCUGCAAACAAGUUGGCUCCACCAGGGAGGUGAACUGCAGCUGUCCCGACUUU
...((((((.(((.(((..((((.(((((..((((((.((((((((.....)))))........((.....)).....))).))))))..)))))))))......))).))))))))).. ( -41.80)
>consensus
CCCAGUUGGAGAUUGCUCACGCCAUCCUUCACGGAGCUGGCGAAGACCACCUCCUCCGUCUCCAUGUCCUGCAAGCAAGUUGGCUCCUCCAGGGAGGUGAACUGCAGCUGUCCCGACUUU
...((((((.(((.(((((((((.(((((...(((((..(((.((((..........)))).).(((.......))).))..)))))...)))))))))...)).))).))))))))).. (-38.82 = -38.50 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:23 2006