Locus 5543

Sequence ID 2R_DroMel_CAF1
Location 17,692,378 – 17,692,498
Length 120
Max. P 0.992771
window8894

overview

Window 4

Location 17,692,378 – 17,692,498
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.75
Mean single sequence MFE -40.80
Consensus MFE -36.80
Energy contribution -37.36
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.91
Structure conservation index 0.90
SVM decision value 2.35
SVM RNA-class probability 0.992771
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17692378 120 - 20766785
AGCUUGAUGGCCAAGUUAUCGGCAGGUCCUUUAUCCUGGAAACCCAGAUCAGACGGUCGCAGGAGGCUCUUGAAUGUGGUGGAUAUUGCGUGUAGGAUAAUGAGAUUGUCAAACUCCUGC
.(((.((((((...))))))))).(..(.(((...((((....))))...))).)..)(((((((..(((((.(((..((....))..))).)))))...(((.....)))..))))))) ( -34.20)
>DroSec_CAF1 2000 120 - 1
AGCUUGAUGGCCAAGUUAUCGGCAGGUCCUUUAUCCUGGAAACCCAGAUCAGAGGGCCGCAGGAGGCUCUUGAAUGUGGUGGAUAUUGCGUGUAGGAUAAUGAGAUUGUCAAACUCCUGC
.(((.((((((...))))))))).((((((((...((((....))))...))))))))(((((((..(((((.(((..((....))..))).)))))...(((.....)))..))))))) ( -43.90)
>DroSim_CAF1 1197 120 - 1
AGCUUGAUGGCCAAGUUAUCGGCAGGUCCUUUAUCCUGGAAACCCAGAUCAGAGGGCCGCAGGAGGCUCUUAAAUGUGGUGGAUAUUGCGUGUAGGAUAAUAAGAUUGUCAAACUCCUGC
.(((.((((((...))))))))).((((((((...((((....))))...))))))))(((((((...((...(((..((....))..)))..))((((((...))))))...))))))) ( -43.50)
>DroEre_CAF1 1818 120 - 1
AGCUUAAUGGCUAAGUUAUCGGCAGGUCCUUUAUCCUGGAAACCCAGGUCAGAGGGCCGCAGGAGGCUCUUGAAUGUGGUGGAUAUUGCGUGUAGGAUAAUGAGAUUGUCAAACUCCUGC
((((....))))............((((((((..(((((....)))))..))))))))(((((((..(((((.(((..((....))..))).)))))...(((.....)))..))))))) ( -45.00)
>DroYak_CAF1 1697 120 - 1
AGCUUUAUGGCUAAGUUAUCGGCAGGUCCCUUAUCCUGAAAACCCAGGUCAGAGGGCCGUAGGAGGCUCUUGAAUGUGGUGGAUAUUGCGUGUAAGAUAAUGAGAUUGUCAAACUCCUGC
.(((..(((((...))))).))).((.(((((..((((......))))...)))))))(((((((..(((((.(((..((....))..))).)))))...(((.....)))..))))))) ( -37.40)
>consensus
AGCUUGAUGGCCAAGUUAUCGGCAGGUCCUUUAUCCUGGAAACCCAGAUCAGAGGGCCGCAGGAGGCUCUUGAAUGUGGUGGAUAUUGCGUGUAGGAUAAUGAGAUUGUCAAACUCCUGC
.(((.((((((...))))))))).((((((((...((((....))))...))))))))(((((((..(((((.(((..((....))..))).)))))...(((.....)))..))))))) (-36.80 = -37.36 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:22 2006