Locus 5542

Sequence ID 2R_DroMel_CAF1
Location 17,692,098 – 17,692,218
Length 120
Max. P 0.897572
window8893

overview

Window 3

Location 17,692,098 – 17,692,218
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.17
Mean single sequence MFE -41.19
Consensus MFE -31.70
Energy contribution -32.62
Covariance contribution 0.92
Combinations/Pair 1.13
Mean z-score -2.11
Structure conservation index 0.77
SVM decision value 1.00
SVM RNA-class probability 0.897572
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17692098 120 - 20766785
UAACGAUGCAAUAUUCCAGAAGUAGCAAACCAGAUCCUCCUUGCUUCGGCAGAGGUGCCUGCAUGGCGUAAAGUUGUGCAUGGCUAUCAAAGAUUAGGAGAAUUUGGCUGCUAGGUGUCA
....(((((....((....)).(((((..((((((.((((((((....)))..((((((((((..((.....))..)))).))).))).......))))).)))))).))))).))))). ( -43.40)
>DroSec_CAF1 1720 120 - 1
UAACGAUGCAAUAUUCCAGCAGCAGAAAACCAGAUCCUCCUUGCUUGAGCAGAGGUGCCUGCAUGGCGUAAAGUUGUGCAUGGCUAUCAAAGAUUAGGAGCAUUUGGCUGCUAGGUGUCA
....(((((...........(((((....((((((.((((((((....)))..((((((((((..((.....))..)))).))).))).......))))).)))))))))))..))))). ( -40.52)
>DroSim_CAF1 917 120 - 1
UAACGAUGCAAUAUUCCAGCAGCAGCAAACCAGAUCCUCCUUGCUUCAGCAGAGGUGCCUGCAUGGCGUAAAGUUGUGCAUGGCUAUCAAAGAUUAGGAGCAUUUGGCUGCUAGGUGUCA
....(((((...........((((((....(((((.((((((((....)))..((((((((((..((.....))..)))).))).))).......))))).)))))))))))..))))). ( -40.62)
>DroEre_CAF1 1538 120 - 1
UAACGAUGCAGUAUUCCAGCAGCAGCAAACCCGAUCCUCCUGGCUUCAGCAAAGGUGCCUGCAUGGCGUGCAAUUGCGCGUGGCUAUCAAAGAUUAGGAGCAUCUGGCUGCUGGGAGUCA
.............((((((((((.(......)(((.((((((((((.(((......(((.....)))((((....))))...)))....))).))))))).)))..)))))))))).... ( -41.40)
>DroYak_CAF1 1417 120 - 1
UGACGAUGCAAUAUUCCAGCAGCAGCAAACCCGAUCCUCCUUGCUUCAGCAAAGGUGCCUGCAUGGCGUGCAAUUGCGCAUGACUGUCAAAAAUGAGGAGCAUUUGGCUGCUGGGUGUCA
....(((((......((((((((..((((.....(((((.((....(((((.....(((.....)))((((....)))).)).))).....)).)))))...))))))))))))))))). ( -40.00)
>consensus
UAACGAUGCAAUAUUCCAGCAGCAGCAAACCAGAUCCUCCUUGCUUCAGCAGAGGUGCCUGCAUGGCGUAAAGUUGUGCAUGGCUAUCAAAGAUUAGGAGCAUUUGGCUGCUAGGUGUCA
....(((((...........(((((....((((((.((((((((....)))).((((((((((((((.....)))))))).))).)))........)))).)))))))))))..))))). (-31.70 = -32.62 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:21 2006