| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,897,220 – 2,897,334 |
| Length | 114 |
| Max. P | 0.798408 |
| Location | 2,897,220 – 2,897,334 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.20 |
| Mean single sequence MFE | -35.89 |
| Consensus MFE | -23.96 |
| Energy contribution | -24.27 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2897220 114 - 20766785 ---ACGACAA-AAGAAAUUUAUAGGCUGAUAGACUCCAAGCUAAUUACUGAAGUGGAGAAGGAGCAGAUCGAGGAGUGGCUCUUCCUCAAGCAGGAGUGCGAGGAGUGUCUCAGCUCA ---.......-............((((((.(.(((((..((......(((.....(((.((((((...((...))...)))))).)))...)))....))..))))).).)))))).. ( -35.40) >DroVir_CAF1 2179 118 - 1 AAUUUUUCAUAUUUUCACUCUCAGAUUAAUGGGCUCAAAUGCAAUUACGGAGCUGGAAAAGGAACAAAUCGAGGAGUGGCUCUUUUUGAAGCAAGAGUGUGAGGAAUGCCUCAGUUCC .((((((((((((((((((((..((((....(((((.............)))))(.........).))))..))))))((((.....).))).))))))))))))))........... ( -28.12) >DroPse_CAF1 2276 116 - 1 UCUUUGCCAU--CGUUUGUUCCAGAUUGAUGGCCUCCAACCUGAUCAGUGAACUGGAGAAGGAGCAGAUCGAGGAGUGGCUCUUUCUCAAGCAGGAGUGCGAGGAGUGCCUCAGCUCG .....(((((--((((((...)))).)))))))(((((.((((..(((....)))((((((((((...((...))...))))))))))...))))..)).)))((((......)))). ( -43.70) >DroEre_CAF1 2211 114 - 1 ---ACGACAA-AAGACAUUUAUAGGCUGAUAGACUCCAAGCUAAUUACUGAUGUGGAGAAGGAGCAGAUCGAGGAGUGGCUCUUCCUCAAGCAGGAGUGCGAGGAGUGCCUCAGCUCA ---.......-............((((((...(((((..((......(((.....(((.((((((...((...))...)))))).)))...)))....))..)))))...)))))).. ( -33.30) >DroYak_CAF1 2175 113 - 1 ---ACGACGA--AGACAUUUCUAGGCUGAUAGAUUCCAAGCUAAUUACUGAAGUGGAGAAGGAGCAGAUCGAGGAGUGGCUUUUUCUCAAACAGGAGUGCGAGGAGUGUCUCAGCUCA ---.......--...........((((((.(.(((((..((......(((.....((((((((((...((...))...))))))))))...)))....))..))))).).)))))).. ( -33.70) >DroPer_CAF1 2276 116 - 1 UCUUUGCCAU--CGUUUGUUCCAGAUUGAUGGCCUCCAACCUGAUCAGUGAACUGGAGAAGGAGCAGAUCGAGGAGUGGCUCUUUCUCAAGCAAGAGUGCGAGGAGUGCCUCAGCUCG .....(((((--((((((...)))).)))))))............(((....)))((((((((((...((...))...))))))))))......((((..((((....)))).)))). ( -41.10) >consensus ___ACGACAA__AGACAUUUCCAGACUGAUAGACUCCAAGCUAAUUACUGAACUGGAGAAGGAGCAGAUCGAGGAGUGGCUCUUUCUCAAGCAGGAGUGCGAGGAGUGCCUCAGCUCA .......................((((((.(.(((((........(((....)))((((((((((...((...))...))))))))))..(((....)))..))))).).)))))).. (-23.96 = -24.27 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:35 2006