Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,690,242 – 17,690,341 |
Length | 99 |
Max. P | 0.603131 |
Location | 17,690,242 – 17,690,341 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -31.45 |
Consensus MFE | -20.94 |
Energy contribution | -20.90 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.14 |
Mean z-score | -1.77 |
Structure conservation index | 0.67 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17690242 99 + 20766785 GAUAAAUAUAAAAAGCCGGUUUGCAGCCGUUUUUGUUUGG--CGAACGAA--UCGAACUCGAUCGGGGAACGG----CGUCCUGGCUGCGAAUACGGAAACUUAUCU- (((((..........(((((((((((((...((((.....--))))(((.--(((....))))))((((....----..)))))))))))))).)))....))))).- ( -29.74) >DroSec_CAF1 7331 101 + 1 GAUAAAUGGAAAAAGCCGGUUUGCAGCCGUUUUUGUUUGG--CAAAUGAACGUCGAACUCGAUCGGGGAACGG----CGUUCUGGCUUUGAAUACGGAAACUUAUCU- (((((......((((((((...((.(((((((((((((((--(........))))))).(....)))))))))----))).))))))))......(....)))))).- ( -32.90) >DroSim_CAF1 4386 103 + 1 GAUAAAUGGAAAAAGCCGGUUUGCAGCCGUUUUUGAAUGAAACGAAUGAACGUCGAACUCGAUCGGGGAACGG----CGUUCCGGCUUUGAAUACGGAAACUUAUCU- (((((......((((((((....((..((((((.....))))))..))(((((((..(((....)))...)))----))))))))))))......(....)))))).- ( -33.30) >DroEre_CAF1 8138 96 + 1 ----AAUGGA-AAAGCCGGUUUGCAGCCGAUUUUGUUUGG--CGAAU----GUCGAACUCGAUCGAAGAACGCCUGGCGUUCUGGCUUCGAAUACGGGAACUUUGCU- ----......-....((((((((.((((((((..((((((--(....----)))))))..))))..(((((((...))))))))))).))))).)))..........- ( -33.80) >DroYak_CAF1 7361 97 + 1 GAUAAAUGGA-AAAGCCGGUUUGCAGCCGCUUUUGUUUGG--CGAAU----GUCGAACUCGAUCGCGGAACGC----CGUUCCGACUUCGAAUACGGGAACUUAACUC ..........-....((((((((((..((((.......))--))..)----).)))))((((...((((((..----.))))))...))))...)))........... ( -27.50) >consensus GAUAAAUGGAAAAAGCCGGUUUGCAGCCGUUUUUGUUUGG__CGAAUGAA_GUCGAACUCGAUCGGGGAACGG____CGUUCUGGCUUCGAAUACGGAAACUUAUCU_ ...............((((((((.((((.......................((((....))))...((((((.....)))))))))).))))).)))........... (-20.94 = -20.90 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:16 2006