Locus 5538

Sequence ID 2R_DroMel_CAF1
Location 17,688,506 – 17,688,598
Length 92
Max. P 0.853952
window8887

overview

Window 7

Location 17,688,506 – 17,688,598
Length 92
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 75.25
Mean single sequence MFE -17.70
Consensus MFE -11.24
Energy contribution -10.58
Covariance contribution -0.66
Combinations/Pair 1.20
Mean z-score -1.70
Structure conservation index 0.64
SVM decision value 0.80
SVM RNA-class probability 0.853952
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17688506 92 - 20766785
UUGGUAAUUCUUAAUGUUUAUUCAGUUAGUAACUCUUUUUAGUU--------CGAGCUAAAAAUAACUGAAAGAGUCGUAACACUUAA-----GAAAAAAUCAAA
(((((..(((((((((((.((((..(((((.....((((((((.--------...))))))))..)))))..))))...)))).))))-----)))...))))). ( -19.70)
>DroSec_CAF1 5601 93 - 1
UUAG------------UUUAUUCAGUUAGUAACUCUUUUCAGUAAGUUAUCAAGAACUAUAAAGAGCUGGAAGAGUCGUAACACUUGAUAUUUGAAGAAAUCAAA
....------------........((((...(((((((.((((...((((........))))...)))))))))))..))))..(((((.((....)).))))). ( -14.90)
>DroSim_CAF1 2649 93 - 1
UUAG------------UUUAUUCAGUUAGUAACUCUUUUCAGUAAGUUAUAAAGAGCUAUAAAGAGCUGAAAGAGUCGUAACACUUGAUAUUUUAAGAAAUCAAA
((((------------..((((.(((..(..(((((((.((((...(((((......)))))...)))))))))))..)...))).))))..))))......... ( -18.50)
>consensus
UUAG____________UUUAUUCAGUUAGUAACUCUUUUCAGUAAGUUAU_AAGAGCUAUAAAGAGCUGAAAGAGUCGUAACACUUGAUAUUUGAAGAAAUCAAA
........................((((...(((((((.((((......................)))))))))))..))))....................... (-11.24 = -10.58 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:15 2006