Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,668,483 – 17,668,590 |
Length | 107 |
Max. P | 0.537414 |
Location | 17,668,483 – 17,668,590 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.55 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -25.98 |
Energy contribution | -26.22 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.82 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17668483 107 - 20766785 CAUAGUUGUAAAAUUCCUGUAAACAAGCCGGACUGCCACAGCUGUGGCAUGC-------GGCAUGUGGCAACUGCAACUGGCAACACA------CACACUCCCUGGCCAACGCACACUGA ...(((((((....(((.((......)).))).((((((((((((.....))-------))).)))))))..)))))))(((......------...........)))............ ( -31.23) >DroSec_CAF1 21899 107 - 1 CAUAGUUGUAAAAUUCCUGUAAACAAGCCGGACUGCCACAGCUGUGGCAUGC-------GGCAUGUGGCAACUGCAACUGGCAACACA------CACACUCCCUGGCCAACGCACACUGA ...(((((((....(((.((......)).))).((((((((((((.....))-------))).)))))))..)))))))(((......------...........)))............ ( -31.23) >DroEre_CAF1 22321 113 - 1 CAUAGUUGUAAAAUUCCUGUAAACAAGCCGGACUGCCACAGCUGUGGCAUGC-------GGCAUGUGGCAACUGCAACUGACAACACACACACACACACUCCUUGGGCAACGCACACUGA ..((((((((....(((.((......)).))).((((((((((((.....))-------))).)))))))..)))))))).......................(((....).))...... ( -30.80) >DroYak_CAF1 34061 116 - 1 CAUAGUUGUAAAAUUCCUGUAAACAAGCCGGACUGCCACAGCUGUGGCAUGCGGCAUGCGGCAUGUGGCAACUGCAACUGGCAACACAC----ACACACUCCUUGGCCAACGCACACUGA ...(((((((....(((.((......)).))).(((((((((((((((.....)).)))))).)))))))..)))))))(((.......----............)))............ ( -33.21) >consensus CAUAGUUGUAAAAUUCCUGUAAACAAGCCGGACUGCCACAGCUGUGGCAUGC_______GGCAUGUGGCAACUGCAACUGGCAACACA______CACACUCCCUGGCCAACGCACACUGA ..(((((((.....(((.((......)).))).((((((((.(((.((((((........)))))).))).)))....)))))............................))).)))). (-25.98 = -26.22 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:10 2006