| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,667,899 – 17,667,994 |
| Length | 95 |
| Max. P | 0.903064 |
| Location | 17,667,899 – 17,667,994 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.09 |
| Mean single sequence MFE | -27.97 |
| Consensus MFE | -18.92 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17667899 95 - 20766785 CAUGGAGUUCGGCACCGGAGU---------UUU-GGGCCCAAGACGGAGCGGACCAGUUCAAGCGAAACAUAAACCAAAGCCGAAAUCCAAAAACCAAAAA---------------CAUU ..((((.((((((...((.((---------(((-(....)))))).((((......))))..............))...)))))).))))...........---------------.... ( -27.70) >DroSec_CAF1 21316 95 - 1 CAGGGAGUUCGGCACCGGAGU---------UUU-GGGCCCAAGACGGAGCGGACCAGUUCAAGCGAAACAUAAACCGAAGCCGAAAUCCAAAAACCAAAAA---------------CAUU ...(((.((((((..(((.((---------(((-(....)))))).((((......))))..............)))..)))))).)))............---------------.... ( -30.00) >DroYak_CAF1 33433 120 - 1 CAGGGAGUUUGGCACCGGAGUUUCUUGAGUUUUGGGCCCCAAGACGGAGUGGACCAGUUCAAGCGAAACAUAAACCAAAGCCGAAAUCCAAAAACCAAAAACCAAAAACCGAAAUCCAUU ...(((.((((((...((.(((((....(((((((...))))))).(..((((....))))..)))))).....))...)))))).)))............................... ( -26.20) >consensus CAGGGAGUUCGGCACCGGAGU_________UUU_GGGCCCAAGACGGAGCGGACCAGUUCAAGCGAAACAUAAACCAAAGCCGAAAUCCAAAAACCAAAAA_______________CAUU ...(((.((((((...((................((.(((........).)).))..(((....))).......))...)))))).)))............................... (-18.92 = -18.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:07 2006