Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,666,516 – 17,666,622 |
Length | 106 |
Max. P | 0.974886 |
Location | 17,666,516 – 17,666,622 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -33.88 |
Consensus MFE | -26.73 |
Energy contribution | -26.85 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -2.93 |
Structure conservation index | 0.79 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17666516 106 + 20766785 ------GCUACUGUUGAAAAAUGUUGUUUACAGGCAAUUAAAAAAAUUACAUGUACGUGCUGCAGCGACGACAAAGUUGCUGCCAGUGCGCAGCAAGGC--------AGCAACAGCAUCA ------(((..(((((.....((((((.((((.(.((((.....)))).).)))).(..((((((((((......))))))).)))..)))))))...)--------))))..))).... ( -35.50) >DroSec_CAF1 19928 108 + 1 ----CAGCUACUGUUGAAAAAUGUUGUUUACCAGCAAUUAAAAAAAUUACAUGUACGUGCUGCAGCGACGACAAAGUUGCUGCCAGUCCGCAGCAAGGC--------AGCAUCGGCAUCA ----..(((..(((((.....(((((.....))))).............(.(((.((..((((((((((......))))))).)))..))..))).).)--------))))..))).... ( -32.00) >DroEre_CAF1 20325 108 + 1 ----CUGCUACUGUUGAGAAAUGUUGUUUACCAGCAAUUAAAAAAAUUACAUGUACGUGCAGCAGCAACGACAAAGUUGCUGCCAGUCCGCAGCAAGGC--------AGCAACAUCAUCG ----(((((..(((((.....(((((.....)))))...................((..(.((((((((......))))))))..)..))))))).)))--------))........... ( -29.80) >DroYak_CAF1 32002 120 + 1 UUUGCUGCUACUGUUGAAAAAUGUUGUUUACCAGCAAUUAAAAAAAUUACAUGUACGUGCUGCAGCGACGACAAAGUUGCUGCCAGUCCGCAGCAAGGCAGCCAGGCAGCAUCAUCAUCA ..(((((((.(((((......(((((.....)))))...............(((.((..((((((((((......))))))).)))..))..))).)))))...)))))))......... ( -38.20) >consensus ____CUGCUACUGUUGAAAAAUGUUGUUUACCAGCAAUUAAAAAAAUUACAUGUACGUGCUGCAGCGACGACAAAGUUGCUGCCAGUCCGCAGCAAGGC________AGCAACAGCAUCA ......(((..(((((.....(((((.....)))))...................((..((((((((((......))))))).)))..))))))).)))..................... (-26.73 = -26.85 + 0.12)
Location | 17,666,516 – 17,666,622 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -34.45 |
Consensus MFE | -22.55 |
Energy contribution | -22.68 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.07 |
Mean z-score | -2.46 |
Structure conservation index | 0.65 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17666516 106 - 20766785 UGAUGCUGUUGCU--------GCCUUGCUGCGCACUGGCAGCAACUUUGUCGUCGCUGCAGCACGUACAUGUAAUUUUUUUAAUUGCCUGUAAACAACAUUUUUCAACAGUAGC------ ...((((((((..--------....((((((((..((((((.....))))))..)).))))))..((((.((((((.....)))))).))))............))))))))..------ ( -31.90) >DroSec_CAF1 19928 108 - 1 UGAUGCCGAUGCU--------GCCUUGCUGCGGACUGGCAGCAACUUUGUCGUCGCUGCAGCACGUACAUGUAAUUUUUUUAAUUGCUGGUAAACAACAUUUUUCAACAGUAGCUG---- ..........(((--------((..((((((((..((((((.....))))))...))))))))..(((..((((((.....))))))..))).................)))))..---- ( -28.50) >DroEre_CAF1 20325 108 - 1 CGAUGAUGUUGCU--------GCCUUGCUGCGGACUGGCAGCAACUUUGUCGUUGCUGCUGCACGUACAUGUAAUUUUUUUAAUUGCUGGUAAACAACAUUUCUCAACAGUAGCAG---- (((..(.((((((--------(((...(....)...))))))))).)..))).((((((((......((.((((((.....))))))))((.....)).........)))))))).---- ( -37.00) >DroYak_CAF1 32002 120 - 1 UGAUGAUGAUGCUGCCUGGCUGCCUUGCUGCGGACUGGCAGCAACUUUGUCGUCGCUGCAGCACGUACAUGUAAUUUUUUUAAUUGCUGGUAAACAACAUUUUUCAACAGUAGCAGCAAA .(((((..((((((((...((((......))))...)))))))...)..)))))(((((.((.....((.((((((.....))))))))((.....))...........)).)))))... ( -40.40) >consensus UGAUGAUGAUGCU________GCCUUGCUGCGGACUGGCAGCAACUUUGUCGUCGCUGCAGCACGUACAUGUAAUUUUUUUAAUUGCUGGUAAACAACAUUUUUCAACAGUAGCAG____ .((((((...((.........)).(((((((......)))))))....))))))(((((...........((((((.....))))))..((.....))...........)))))...... (-22.55 = -22.68 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:00 2006