Locus 5523

Sequence ID 2R_DroMel_CAF1
Location 17,664,374 – 17,664,492
Length 118
Max. P 0.700193
window8849

overview

Window 9

Location 17,664,374 – 17,664,492
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.50
Mean single sequence MFE -35.05
Consensus MFE -32.71
Energy contribution -33.21
Covariance contribution 0.50
Combinations/Pair 1.03
Mean z-score -1.67
Structure conservation index 0.93
SVM decision value 0.35
SVM RNA-class probability 0.700193
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17664374 118 + 20766785
AAAAAGUGGUGCAAGUAAACAGCAUGAGGGCCAAUGGACUCGCAGCAGCAGUCGCAUCAACAUCACAACC--AAGUCACUGGCUGCUGUAAAUGGCCAACAACUCGGGCUUGACCCAUGG
.....((((..(((((...(((..((..(((((..(....)(((((((((((.((...............--..)).))).))))))))...)))))..)).)).).)))))..)))).. ( -34.83)
>DroSec_CAF1 17811 120 + 1
AAAAAGUGGUGCAAGUAAAAAGCAUGAGGGCCAAUGGACUCGCAGCAGCAGUCGCAUCAACAUCACAACCACAAAUCACUGGCUGCUGUAAAUGGCCAACAACUCGGGCUUGACCCAUGG
.....((((..(((((....((..((..(((((.((......))((((((((((.........................))))))))))...)))))..)).))...)))))..)))).. ( -33.01)
>DroEre_CAF1 18199 118 + 1
AAAAAGUGGUGCAAGUAAACAGCAUGAGGGCCAAUGGACUCGCAGCAGCAGGCGCAUCAACAUCACAACC--AAGUCACUUGCUGCUGCAAAUGGCCAACAACUCGGGCUUGACCCAUGG
.....((((..(((((...(((..((..(((((..(....)(((((((((((.((...............--..).).)))))))))))...)))))..)).)).).)))))..)))).. ( -38.63)
>DroYak_CAF1 29890 118 + 1
AAAAAGUGGUGCAAGUAAACAGCAUGAGGGCCAAUGGACUCGCAGCAGCAGUCGCAUCAACAUCACAACC--AAGUCACUGGCUGCAGCAAAUGGCCAACAACUCGGGCUUGACCCAUGG
.....((((..(((((...(((..((..(((((...(.((.(((((..((((.((...............--..)).))))))))))))...)))))..)).)).).)))))..)))).. ( -33.73)
>consensus
AAAAAGUGGUGCAAGUAAACAGCAUGAGGGCCAAUGGACUCGCAGCAGCAGUCGCAUCAACAUCACAACC__AAGUCACUGGCUGCUGCAAAUGGCCAACAACUCGGGCUUGACCCAUGG
.....((((..(((((....((..((..(((((..(....)(((((((((((.((...................)).))).))))))))...)))))..)).))...)))))..)))).. (-32.71 = -33.21 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:39 2006