Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,663,889 – 17,664,101 |
Length | 212 |
Max. P | 0.794303 |
Location | 17,663,889 – 17,663,994 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -28.44 |
Consensus MFE | -22.65 |
Energy contribution | -23.78 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.04 |
Mean z-score | -1.77 |
Structure conservation index | 0.80 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17663889 105 - 20766785 ACCUGGACAUGGCUUUAUAAUUUGCACAAUGGCCAGGAGUGAAAAGAAGUCGACUUGAAAAGAUACGAACUGUCUUAUCGAGAACG---------------AUCGACACUACUCUAUGCA .(((((.(((.((..........))...))).)))))...........((((((((((.((((((.....)))))).)))))....---------------.)))))............. ( -27.60) >DroSec_CAF1 17318 120 - 1 ACCUGGACAUGGCUUUAUAAUUUUCACAAUGGCCAGGAGUGAAAAGAAGUCGACUUGAAAAGAUACGAACUGUCUUAUCGAGAACGAAAGCUUCAACAUCAAUCGACACUGCUCUAUGAA .(((((.(((..................))).)))))...........((((((((((.((((((.....)))))).)))))..(....)............)))))............. ( -26.47) >DroEre_CAF1 17718 120 - 1 ACCUGGACAUGGCUUUAUAAUUUGCACAAUGGCCAGGAGUGAAAAGAAAUCGACUUCAAAAGAUACGAACUGUCUUAUCGAGAACGAAAGCUUCAACAUGAGUCGACACAGCUCUAUGCA .(((((.(((.((..........))...))).))))).(((........((((((.((.((((((.....)))))).....((((....).)))....))))))))))).((.....)). ( -29.90) >DroYak_CAF1 29344 109 - 1 ACCUGGACAUGGCUUUAUAAUUUGCACAAUGGCCAGGAUUGAAAGAAAGUCGACUUGAAAAGAUACGAACUGUCUGAUCGAGAAUGAAAGCUUCAGCAUGGUUCGACAU----------- .(((((.(((.((..........))...))).)))))...........((((((((((..(((((.....)))))..))))).......((....)).....)))))..----------- ( -29.80) >consensus ACCUGGACAUGGCUUUAUAAUUUGCACAAUGGCCAGGAGUGAAAAGAAGUCGACUUGAAAAGAUACGAACUGUCUUAUCGAGAACGAAAGCUUCAACAUGAAUCGACACUGCUCUAUGCA .(((((.(((.((..........))...))).)))))...........((((((((((.((((((.....)))))).)))))..(....)............)))))............. (-22.65 = -23.78 + 1.13)
Location | 17,663,994 – 17,664,101 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -32.03 |
Energy contribution | -32.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.93 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17663994 107 - 20766785 UUUGUCUUCGGCUGUUGCUGCAGCUGGAGGUGUUAUUUUUAUGGCUUUAUAAUGUGAGUCAGA-------------CGGGCUCUUCCUUGGUUCUUGCCCCGUUACGUGGCAUGUCAAUC .....((((((((((....))))))))))(((((((.....((((((........))))))((-------------(((((....(....).....).))))))..)))))))....... ( -33.60) >DroEre_CAF1 17838 107 - 1 UUUGUCUUCGGCUGUUGCAGCAGCUGGAGGUGUUAUUUUUAUGGCUUUAUAAUGUGAGUCAGA-------------CGGGCUCUUCCUUGGUUCUUGCCCCGUUACGUGGCAUGUCAAUC .....((((((((((....))))))))))(((((((.....((((((........))))))((-------------(((((....(....).....).))))))..)))))))....... ( -33.40) >DroYak_CAF1 29453 120 - 1 UUUGUCUUCGGCUGUUGCUGCAGCUGGAGGUGUUAUUUUUAUGGCUUUAUAAUGUGAGUCAGACGGUACAGACGGACGGGCUCUUCCUUGGUUCUUGCCCCGUUACGUGGCAUGUCAAUC ..(..((((((((((....))))))))))..).........((((((........))))))((((((....((((((((((....(....).....).)))))).))).)).)))).... ( -36.80) >consensus UUUGUCUUCGGCUGUUGCUGCAGCUGGAGGUGUUAUUUUUAUGGCUUUAUAAUGUGAGUCAGA_____________CGGGCUCUUCCUUGGUUCUUGCCCCGUUACGUGGCAUGUCAAUC .....((((((((((....))))))))))(((((((.....((((((........))))))................((((....(....).....))))......)))))))....... (-32.03 = -32.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:37 2006