Locus 552

Sequence ID 2R_DroMel_CAF1
Location 2,893,564 – 2,893,655
Length 91
Max. P 0.521851
window1024

overview

Window 4

Location 2,893,564 – 2,893,655
Length 91
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 86.12
Mean single sequence MFE -29.16
Consensus MFE -17.53
Energy contribution -18.93
Covariance contribution 1.40
Combinations/Pair 1.09
Mean z-score -2.30
Structure conservation index 0.60
SVM decision value -0.02
SVM RNA-class probability 0.521851
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2893564 91 - 20766785
AAUCGCGAGAGCGUGCGAGUAUUUGUGUGUGCGUGUGAGCGUUUGUUUUGGGACACCGAUACGGAUAC------GGGUACGGAUAGACGGAUAUACG
...(((....)))..((.((((((((.(((.((((...(..(((((.((((....)))).)))))..)------...)))).))).)))))))).)) ( -30.80)
>DroSec_CAF1 20340 90 - 1
AAUCGCGAGAGCGUGCGUGUAUUUGUGUGUGCGUGUGAGCGU-UGUUUUGGGACACCGAUACGGAUAC------GGGUACGGAUACACGGAUAUUCG
...(((....)))..((.((((((((((((.((((...(..(-(((.((((....)))).))))...)------...)))).)))))))))))).)) ( -31.00)
>DroSim_CAF1 25348 90 - 1
AAUCGCGAGAGCGUGCGUGUAUUUGUGUGUGCGUGUGAGCGU-UGUUUUGGGACACCGAUACGGAUAC------GGGUACGGAUACACGGAUAUUCG
...(((....)))..((.((((((((((((.((((...(..(-(((.((((....)))).))))...)------...)))).)))))))))))).)) ( -31.00)
>DroEre_CAF1 20140 90 - 1
AAUCGCGAGAGCGUGUGUGUAUUUGUGUA------UGAACGU-UGUUUUGGGACACCGAUACGGAUACGGAUACGGGUACGGAUAUACGAAUAUACG
...(((....)))...(((((((((((((------(...(((-(((.((((....)))).)))...)))....((....)).)))))))))))))). ( -28.50)
>DroYak_CAF1 20426 76 - 1
AAUCGCGAGAGCGUGUGUGUAUUUGUGUG------UGAGCGU-UGUUUUGGGACACCGAUACGGAUAC------GGGUACGGA--------UAUACG
....((....))((((.(((((((((((.------((..((.-((((....)))).))...)).))))------))))))).)--------)))... ( -24.50)
>consensus
AAUCGCGAGAGCGUGCGUGUAUUUGUGUGUGCGUGUGAGCGU_UGUUUUGGGACACCGAUACGGAUAC______GGGUACGGAUACACGGAUAUACG
...(((....)))..((((((((((((................(((.((((....)))).)))..............))))))))))))........ (-17.53 = -18.93 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:32 2006