| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,658,919 – 17,659,036 |
| Length | 117 |
| Max. P | 0.911940 |
| Location | 17,658,919 – 17,659,036 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.62 |
| Mean single sequence MFE | -30.36 |
| Consensus MFE | -29.04 |
| Energy contribution | -29.28 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17658919 117 - 20766785 AACAGGUUGCA---ACUGCCACACUGAGUACGUGACCGUUCGGUGCAGGAAUAAAUAACUCAAUUUGGGAUCGGCAAAAAAGUGUUAACUUGAAAUCUGGCAAUAAAUCAAUGGCCAGGG ..(((((((((---..((((.((((((..(((....))))))))).............(((.....)))...))))......)).)))))))...((((((.((......)).)))))). ( -29.70) >DroSec_CAF1 12434 117 - 1 AACAGGUUGCA---ACUGCCACACUGAGUACGUGACCGUUCGGUGCAGGAAUAUAUAACUCAAUUUGGGAUCGGCAAAAAAGUGUUAACUUGAAAUCUGGCAAUAAAUCAAUGACCAGGG ..(((((((((---..((((.((((((..(((....))))))))).............(((.....)))...))))......)).)))))))...(((((((.........)).))))). ( -26.80) >DroSim_CAF1 18400 116 - 1 AACAGGUUGCA---ACUGCCACACUGAGUACGUGACCGUUCGGUGCAGGAAUAAAUAACUCAAUUUGGGAUCGGCAAA-UAGUGUUAACUUGAAAUCUGGCAAUAAAUCAAUGGCCAGGG ..(((((((((---..((((.((((((..(((....))))))))).............(((.....)))...))))..-...)).)))))))...((((((.((......)).)))))). ( -30.30) >DroEre_CAF1 12713 117 - 1 AACAGGUUGCA---ACUGCCACACUGAGUACGUGACCGUUCGGUGCAGGAAUAAAUAACUCAAUUUGGGAUCGGCAAAAAAGUGUUAACUUGAAAUCUGGCAAUAAAUCAAUGGCCAGAA ..(((((((((---..((((.((((((..(((....))))))))).............(((.....)))...))))......)).)))))))...((((((.((......)).)))))). ( -30.60) >DroYak_CAF1 24180 120 - 1 AACAGGUUGCCACUACUGCCACACUGAGUACGUGACCGUUCGGUGCAGGAAUAAAUAACUCAAUUUGGGAUCGGCAAAAAAGUGUUAACUUGAAAUCUGGCAAUAAAUCAAUGGCCAGGG ..(((((((.((((..((((.((((((..(((....))))))))).............(((.....)))...))))....)))).)))))))...((((((.((......)).)))))). ( -34.40) >consensus AACAGGUUGCA___ACUGCCACACUGAGUACGUGACCGUUCGGUGCAGGAAUAAAUAACUCAAUUUGGGAUCGGCAAAAAAGUGUUAACUUGAAAUCUGGCAAUAAAUCAAUGGCCAGGG ..(((((((((.....((((.((((((..(((....))))))))).............(((.....)))...))))......)).)))))))...((((((.((......)).)))))). (-29.04 = -29.28 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:18 2006