Locus 5511

Sequence ID 2R_DroMel_CAF1
Location 17,657,692 – 17,657,805
Length 113
Max. P 0.512142
window8824

overview

Window 4

Location 17,657,692 – 17,657,805
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.40
Mean single sequence MFE -35.38
Consensus MFE -24.91
Energy contribution -24.87
Covariance contribution -0.04
Combinations/Pair 1.14
Mean z-score -1.80
Structure conservation index 0.70
SVM decision value -0.04
SVM RNA-class probability 0.512142
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17657692 113 + 20766785
UUUUAAUGAUUUUCCUUUGUUUUGCG-------UUUUUCGCAAAUGUUUUCGCAUGGGAAAUGAUUGGGGUGCAGUGCAGAAAAGUUGGGCAGCUUGGCGGGGAAACUGCGCGUCAUUGA
..((((((((((((((.(((((((((-------.....)))))).......))).))))))........(((((((...(..(((((....)))))..)......))))))))))))))) ( -33.01)
>DroSec_CAF1 11224 113 + 1
UUUUAAUGAUUUUCCUUUGUUUUGCG-------UUUUUCGAAAAUGUUUUCGCAUGGGAAAUGAUUGGGGUGCAGUGUAGAAAAGCUGGGCGGCUUGGCGGGGAAACUGCGCGUCAUUGA
..((((((((((((((.(((...(((-------(((.....))))))....))).))))))........(((((((...(..(((((....)))))..)......))))))))))))))) ( -33.80)
>DroSim_CAF1 17183 113 + 1
UUUUAAUGAUUUUUCUUUGUCUUGCG-------UUUUUCGCAAAUGUUUUCGCAUGGGAAAUGAUUGGGGUGCAGUGCAGAAAAGCUGGGCGGCUUGGCGGGGAAACUGCGCGUCAUUGA
..((((((((....((..((((((((-------.....)))))..((((((.....)))))))))..))(((((((...(..(((((....)))))..)......))))))))))))))) ( -33.10)
>DroEre_CAF1 11487 120 + 1
UUUUAAUGAUUUUCCUUUGUUUUGUGUUUUGUGCUUUUCGCCAAUGUUUUCGCAUGGGAAAUGAUUGGGGAGUAGUGCAGAAAAACUGGGCAGCCUGGCGGGGAAACUCCGCGUCAUUGA
..((((((((......(((((..((.(((((..((.(((.(((((((((((.....)))))).))))).))).))..)))))..))..)))))....(((((....).)))))))))))) ( -41.50)
>DroYak_CAF1 22924 120 + 1
UUUUAAUGAUUUUCCUUUGUUUUGUGGUUGGUGUUUUUCGCAAACGUUUUCGCAUGGGAAAUGAUUGGGGAGCAGUGCAGAAAAAGUGGGCAGCUCUGCGGGGAAACUCCGCGUCAUUGA
..((((((((((((((.(((......(((.(((.....))).)))......))).)))))).......(((((.((.((.......)).)).)))))(((((....).)))))))))))) ( -35.50)
>consensus
UUUUAAUGAUUUUCCUUUGUUUUGCG_______UUUUUCGCAAAUGUUUUCGCAUGGGAAAUGAUUGGGGUGCAGUGCAGAAAAGCUGGGCAGCUUGGCGGGGAAACUGCGCGUCAUUGA
..((((((((((((((.(((((((((............)))))).......))).))))))..........((.((.(((.....))).)).))...(((((....)).))))))))))) (-24.91 = -24.87 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:14 2006