Locus 5510

Sequence ID 2R_DroMel_CAF1
Location 17,657,500 – 17,657,620
Length 120
Max. P 0.974586
window8823

overview

Window 3

Location 17,657,500 – 17,657,620
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.48
Mean single sequence MFE -22.26
Consensus MFE -19.30
Energy contribution -19.90
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.87
SVM decision value 1.73
SVM RNA-class probability 0.974586
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17657500 120 + 20766785
UUUAUAACUUUCACUGGCAGCGUCGCUGUCUCAUCUCUCAAUAGAAAACAUUAAUUAAAGCAUUAAAUGCACAUAAUUAACACAGUCGCAGAUGCUGCCGCUUUUUUCUCCCGAUUAUAU
...............((((((((((((((....(((......))).....(((((((..((((...))))...))))))).)))))....)))))))))..................... ( -25.10)
>DroSec_CAF1 11036 119 + 1
UUUAUAACUUUCACU-GCAGCGUCGCUGUCUCAUCUCUCAAUAGAAAACAUUAAUUCAAGCAUUAAAUGCACAUAAUUAACACAGUCGCAGAUGCUGCCGCUUCUUUCUCCCGAUUAUAU
...............-(((((((((((((..............(((........)))..((((...))))...........)))))....))))))))...................... ( -19.30)
>DroSim_CAF1 16995 119 + 1
UUUAUAACUUUCACU-GCAGCGUCGCUGUCUCAUCUCUCAAUAGAAAACAUUAAUUAAAGCAUUAAAUGCACAUAAUUAACACAGUCGCAGAUGCUGCCGCUUCUUUCUCCCGAUUAUAU
...............-(((((((((((((....(((......))).....(((((((..((((...))))...))))))).)))))....))))))))...................... ( -20.90)
>DroEre_CAF1 11291 119 + 1
UUUAUAACUUUCACU-GCAGCGUCGCUGGCUCAUCUUUCAAUAGAAAACAAUAAUUAAAGCAUUAAAUGCACAUAAUUAACACAGUCGCAGAUGCUGCCGCUUCUUUCGCCCGAUUAUAU
..(((((........-((((((((((.((((..(((......)))......((((((..((((...))))...))))))....)))))).)))))))).((.......))....))))). ( -23.60)
>DroYak_CAF1 22728 119 + 1
UUUAUAACUUUCACU-GCAGCGUCGCUGUCUCAUCUCUCAAUAGAAAACAUUAAUUAAAGCAUUAAAUGCACAUAAUUAACACAGUCGCAGAUGCUGCCGCUUCUUUUGCUCGUUUAUAU
..(((((........-(((((((((((((....(((......))).....(((((((..((((...))))...))))))).)))))....)))))))).((.......))....))))). ( -22.40)
>consensus
UUUAUAACUUUCACU_GCAGCGUCGCUGUCUCAUCUCUCAAUAGAAAACAUUAAUUAAAGCAUUAAAUGCACAUAAUUAACACAGUCGCAGAUGCUGCCGCUUCUUUCUCCCGAUUAUAU
................(((((((((((((....(((......))).....(((((((..((((...))))...))))))).)))))....))))))))...................... (-19.30 = -19.90 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:12 2006