Locus 551

Sequence ID 2R_DroMel_CAF1
Location 2,891,756 – 2,891,857
Length 101
Max. P 0.972286
window1023

overview

Window 3

Location 2,891,756 – 2,891,857
Length 101
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 71.33
Mean single sequence MFE -20.29
Consensus MFE -14.92
Energy contribution -14.76
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.52
Structure conservation index 0.74
SVM decision value 1.69
SVM RNA-class probability 0.972286
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2891756 101 - 20766785
UACUCCACCCACU----AACUAAUUUAUACACAGCACGCUGGUGGUUAAACAGAUUUACUUUGGCCGCUCUCAUCGAUUUGAUGAGAA--UGCACUCAUCGGGUCGC
.............----..............(((....)))(((((((((.........)))))))))......((((((((((((..--....)))))))))))). ( -25.70)
>DroSec_CAF1 18514 105 - 1
UACUUCACCCACCACUAAACUAAUUUAUACACAGCACACUGGUGUUUAAACAAAUUCCCUUUGGCCGCUCUCAUCGAUUUGAUGAGAA--UGCACUCAUCGGGUCGC
......((((.(((.........((((.((((((....)).)))).))))...........)))..(((((((((.....))))))).--.)).......))))... ( -20.85)
>DroSim_CAF1 23221 107 - 1
UACUUCAUCCACCACUAAACUAAUUUAUACACAGCACACUGGUGUUUAAACAAAUUCCCUUUGGCCGCUCUCAUCGAUUUGAUGAGAAUAUGCACUCAUCGGGUCGC
.......................((((.((((((....)).)))).))))......(((..(((..(((((((((.....)))))))....))..)))..))).... ( -19.40)
>DroEre_CAF1 18349 84 - 1
UAUC----CCACCUCUAAACUAAUUUAUAUACUGCACAUU----------------UCCUUCGGUC-CUCUCAUCGAUUUGAUGAGAA--UGCUUUCAUCGGGUCGA
....----................................----------------..(....)..-......((((((((((((((.--...)))))))))))))) ( -15.70)
>DroYak_CAF1 18579 83 - 1
----------------------AUAUGUAUAUUGCACAUUCAAGCUCAAACAAAUAUCCUGUGGUCGCUCUUAUCGAUUUGAUGAGAA--CGCUCUCAUCGGGUCGG
----------------------....................(((....(((.......)))....))).....(((((((((((((.--...))))))))))))). ( -19.80)
>consensus
UACU_CA_CCACC_CUAAACUAAUUUAUACACAGCACACUGGUGUUUAAACAAAUUUCCUUUGGCCGCUCUCAUCGAUUUGAUGAGAA__UGCACUCAUCGGGUCGC
..........................................................................((((((((((((........)))))))))))). (-14.92 = -14.76 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:31 2006