Locus 5503

Sequence ID 2R_DroMel_CAF1
Location 17,654,845 – 17,654,965
Length 120
Max. P 0.612193
window8798

overview

Window 8

Location 17,654,845 – 17,654,965
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.69
Mean single sequence MFE -26.39
Consensus MFE -19.76
Energy contribution -20.76
Covariance contribution 1.00
Combinations/Pair 1.07
Mean z-score -1.66
Structure conservation index 0.75
SVM decision value 0.16
SVM RNA-class probability 0.612193
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17654845 120 + 20766785
ACCUAACCAGCUUCCGCUGCACUCAGACUUCCUUCUCCACUCCUGAACUUUAGAGGGUAUACACAGAUAUAAGGUGUACAUAUAGAAAAGAUCCGACAAAGUCAACUUCAACGGAAGUAC
.........(((((((.((......(((((...((...((((((((...)))).)))).(((((.........)))))................))..))))).....)).))))))).. ( -22.30)
>DroSec_CAF1 8413 111 + 1
-----ACCAGCUUCCGCUGCACUCAGACUUCCUCCUCCACUUCUGAACUUUAGAGGGUAAAC----UUAUAAGGUGUACAUAUAGGAAAGAUCCGACAAAGUCGAUUUCAACGGAAGUAC
-----....(((((((.((...((.(((((..((.....(((((((...)))))))(((.((----(.....))).))).....(((....)))))..)))))))...)).))))))).. ( -27.70)
>DroSim_CAF1 14339 116 + 1
ACCUAACCAGCUUCCGCUGCACUCAGACUUCCUCCUCCACUUCUGAACUUUAGAGGGUAAAC----UUAUAAGGUGUACAUAUAGGAAAGAUCCGACAAAGUCGACUUCAACGGAAGUAC
.........(((((((.((...((.(((((..((.....(((((((...)))))))(((.((----(.....))).))).....(((....)))))..)))))))...)).))))))).. ( -27.70)
>DroEre_CAF1 8640 114 + 1
ACCUAACCAGCUUCCGCUGCACUGAGACUUCCUUCACCAAUUCUGAACUUUAGAGGGUAUA------UAUUCAGUGUACAUAUAGCAAAGAUCCGACAAAGUCGACUUCAACGGAAGUAC
.........(((((((.(((((((((....(((((.................)))))....------..)))))))))...........((..((((...))))...))..))))))).. ( -28.13)
>DroYak_CAF1 20083 114 + 1
ACCUAACCAGCUUCCGCUGCACUCAGACAUCCUCCUCCACUUCUACACUUUAGAGGGUAUA------UAUUAAGUGUACAUAUAGGAAAGAUCCGACAAAGUCGACUUCAACGGAAGUAC
.........(((((((.((..........((((......((((((.....))))))(((((------(.....))))))....))))......((((...))))....)).))))))).. ( -26.10)
>consensus
ACCUAACCAGCUUCCGCUGCACUCAGACUUCCUCCUCCACUUCUGAACUUUAGAGGGUAUAC_____UAUAAGGUGUACAUAUAGGAAAGAUCCGACAAAGUCGACUUCAACGGAAGUAC
.........(((((((.((......(((((..((.....((((((.....))))))((((((...........))))))...............))..))))).....)).))))))).. (-19.76 = -20.76 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:48 2006