Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,870,075 – 2,870,165 |
Length | 90 |
Max. P | 0.700468 |
Location | 2,870,075 – 2,870,165 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -28.42 |
Consensus MFE | -20.98 |
Energy contribution | -21.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.32 |
Mean z-score | -1.50 |
Structure conservation index | 0.74 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2870075 90 + 20766785 UUUGGUGCCCACAGACACCUCCAUUGUUCGAACUCUUUCCAAGAGAUUCAGCUUUGGAGGAACCGAAGCUACGGGCUCUGAGCGAAACAU---- ((..(.((((.......((((((..(((.(((((((.....)))).))))))..))))))....(......))))).)..))........---- ( -28.60) >DroGri_CAF1 23353 92 + 1 UUCGGUGCCCAAAGGAACUUCCAUAGUGCGCACUCUCUCGAGCAGGUUCAGUUUGGGUGGCACAGAGGCAACGGGCUCUAAAUGGGAUUAA--A ...((.((((...((.....))...((((.(((((.((.(((....)))))...)))))))))...(....))))).))............--. ( -27.80) >DroSec_CAF1 21639 94 + 1 CUUCGUGCCCAAAGACACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGGGGAACCGAAGCAACGGGCUCUGAGCGAAACAUUUGC .(((((((((.......((((((..((..(((((((.....)))).))).))..))))))....(......))))).....)))))........ ( -26.80) >DroSim_CAF1 28535 94 + 1 CUUGGUGCCCAAAGACACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGAGGAACCGAAGCAACAGGCUCUGAGCGAAACAUAUGC ((..(.(((........((((((..((..(((((((.....)))).))).))..))))))....(......).))).)..))............ ( -25.60) >DroEre_CAF1 20945 94 + 1 CUUGGUGCCCAAGGAAACCUCCAUUGUGCGGACUCUUUCCAGGAGAUUCAACUUUGGAGGAACUGAAGCCACGGGCUCUGAGCGAAAGACAAGU ((..(.((((..((...((((((..((..(((((((.....)))).))).))..))))))........))..)))).)..))(....)...... ( -31.60) >DroYak_CAF1 22700 94 + 1 CGUGGUGGCCAAAGAAACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGAGGAACCGAAGCAACGGGCUCUGGGCGAAUCAAAAGC ..((((.(((..(((..((((((..((..(((((((.....)))).))).))..))))))..(((......)))..))).)))..))))..... ( -30.10) >consensus CUUGGUGCCCAAAGAAACCUCCAUUGUGCGAACUCUUUCCAAGAGAUUCAACUUUGGAGGAACCGAAGCAACGGGCUCUGAGCGAAACAUA_GC (((((.((((.......((((((..((..(((((((.....)))).))).))..))))))....(......))))).)))))............ (-20.98 = -21.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:30 2006