Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,309,994 – 1,310,091 |
Length | 97 |
Max. P | 0.997967 |
Location | 1,309,994 – 1,310,091 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 73.88 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -16.99 |
Energy contribution | -18.10 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.00 |
Structure conservation index | 0.76 |
SVM decision value | 2.97 |
SVM RNA-class probability | 0.997967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1309994 97 - 20766785 CUUUUGAGGGGGUUGUUGGGGGUAGAGGGGAUAAAUAGCUUUUGGAACCAACACCACCAGUGGUAAGACUCACUUGCAAAAGAUUUACGGAAUCGAG (((((((((((((((((((...((((((..........))))))...)))))((((....))))..))))).))).))))))............... ( -24.90) >DroSec_CAF1 28411 73 - 1 CUUU-AAAGGGGGUGUUGAAGGUAGAGGGGAUAAAUACCAUUUGGAAGCAGCACCACCAGUGGUAA-----------------------GAAUCGAG (((.-.(..(((((((((....((((.((........)).))))....))))))).))..)...))-----------------------)....... ( -18.00) >DroSim_CAF1 7364 74 - 1 CUUUUGAGGGGGGUGUUGGAGGUAGAGGGGAUAAAUACCUUUUGGAACCAGCACCACCAGUGGUAG-----------------------GAAUCAAG .......((..((((((((...(((((((........)))))))...)))))))).))..((((..-----------------------..)))).. ( -24.30) >consensus CUUUUGAGGGGGGUGUUGGAGGUAGAGGGGAUAAAUACCUUUUGGAACCAGCACCACCAGUGGUAA_______________________GAAUCGAG ........((.((((((((...(((((((........)))))))...)))))))).))....................................... (-16.99 = -18.10 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:59 2006