Locus 5495

Sequence ID 2R_DroMel_CAF1
Location 17,651,362 – 17,651,479
Length 117
Max. P 0.884083
window8768

overview

Window 8

Location 17,651,362 – 17,651,479
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.39
Mean single sequence MFE -38.12
Consensus MFE -36.84
Energy contribution -36.84
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 0.93
SVM RNA-class probability 0.884083
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17651362 117 - 20766785
AGAACAAGUCUCACAAAUUGAUUGCCCAGAGUGGAGCAUGGAGAAUUGACCCACUGUGGCCGAGAC---GGCCAUGGAGAAUUGGUAUAACUGCGCUUUGCUCGGCUAACUGUGGCAAGA
.....................(((((((((((.(((((.((.(..(((..((((((((((((...)---)))))))).....)))..)))...).)).))))).)))..))).))))).. ( -38.20)
>DroSec_CAF1 4979 117 - 1
AGAACAAGUCCCACAAAUUGAUUGCCCAGAGUGGAGCAUGGAGAAUUGACCCACUGUGGCCGAGAC---GGCCAUGGAGAAUUGGUAUAACUGCGCUUUGCUCGGCUAACUGUGGCAAGA
.....................(((((((((((.(((((.((.(..(((..((((((((((((...)---)))))))).....)))..)))...).)).))))).)))..))).))))).. ( -38.20)
>DroSim_CAF1 10882 117 - 1
AGAACAAGUCCCACAAAUUGAUUGCCCAGAGUGGAGCAUGGAGAAUUGACCCACUGUGGCCGAGAC---GGCCAUGGAGAAUUGGUAUAACUGCGCUUUGCUCGGCUAACUGUGGCAAGA
.....................(((((((((((.(((((.((.(..(((..((((((((((((...)---)))))))).....)))..)))...).)).))))).)))..))).))))).. ( -38.20)
>DroEre_CAF1 5099 117 - 1
AGAACAAGUCCCACAAAUUGAUUGCCCAGAGUGGAGCAUGGAGAAUUGACCCACUGUGGCCGAGAC---GGCCAUGGAGAAUUGGUAUAACUGCGCUUUGCUCGGCUAACUGUGGCAAGA
.....................(((((((((((.(((((.((.(..(((..((((((((((((...)---)))))))).....)))..)))...).)).))))).)))..))).))))).. ( -38.20)
>DroYak_CAF1 16403 120 - 1
AGAACAAGUCGCACAAAUUGAUUGCCCAGAGUGGAGCAUGGAGAAUUGACCCACUGUGGCCGAGACUGUGGCCAUGGAGAAUUGGUAUAACUGCGCUUUGCUCGGCUAACUGUGGCAAGA
.....................(((((((((((.(((((.((.(..(((..((((((((((((......))))))))).....)))..)))...).)).))))).)))..))).))))).. ( -37.80)
>consensus
AGAACAAGUCCCACAAAUUGAUUGCCCAGAGUGGAGCAUGGAGAAUUGACCCACUGUGGCCGAGAC___GGCCAUGGAGAAUUGGUAUAACUGCGCUUUGCUCGGCUAACUGUGGCAAGA
.....................(((((((((((.(((((.((.(..(((..(((((((((((........)))))))).....)))..)))...).)).))))).)))..))).))))).. (-36.84 = -36.84 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:19 2006