Locus 5490

Sequence ID 2R_DroMel_CAF1
Location 17,650,171 – 17,650,285
Length 114
Max. P 0.853765
window8758

overview

Window 8

Location 17,650,171 – 17,650,285
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.91
Mean single sequence MFE -22.47
Consensus MFE -19.24
Energy contribution -19.40
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.86
SVM decision value 0.80
SVM RNA-class probability 0.853765
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17650171 114 + 20766785
CGAAUUUCCUGCUUACCACUGUGCGAUGCCCACACAUGGCCAGCCCGCUGAAGCUAGCUAAUUUAUCACUGGCAUUCACGCUUCGGUAUUCCCUACUCCACCUAUAUAUCCA------UA
.((((..((.(((..(((.((((.(.....).)))))))..)))..(((((((((((...........))))).)))).))...)).)))).....................------.. ( -23.50)
>DroSec_CAF1 3774 112 + 1
CGAAUUUCCCACUUACCACUGUGCGAUGCCCACACAUGGCCAGCCCGCUGAAGCUAGCUAAUUUAUCACUGGCAUUCACGCUUCAGUAUUCCCUAUUCCACCUA--UAUCCA------UA
.((((.............(((.((.(((......))).)))))...((((((((..((((.........))))......)))))))))))).............--......------.. ( -20.90)
>DroSim_CAF1 9692 112 + 1
CGAAUUUCCCGCUUACCACUGUGCGAUGCCCACACAUGGCCAGCCCGCUGAAGCUAGCUAAUUUAUCACUGGCAUUCACGCUUCGGUAUUCCCUAUUCCACCUA--UAUCCA------UA
.((((........((((.(((.((.(((......))).)))))...(((((((((((...........))))).)))).))...))))......))))......--......------.. ( -23.74)
>DroEre_CAF1 3843 105 + 1
-------CCUGCUCACCACUGUGCGGUGCCCACACAUGGCCAGCCCGCUGAAGCUAGCUAAUUUAUCACUGGCAUUCACGCUUCGGUAUUCCCUAUUCCACCUA--UAUCCA------UA
-------...(((..(((.((((.((...)).)))))))..)))..((((((((..((((.........))))......)))))))).................--......------.. ( -23.10)
>DroYak_CAF1 15109 111 + 1
-------AAUAAUAACCACGGUGCGGUGCCCACACAUGGCCAGUCCGCUGAAGCUAGCUAAUUUAUCACUGGCAUUCACGCUUCGGUAUUCCCUAUUCCACCUA--UAUCCAUACCCAUA
-------............((((.((.(((.......)))....))((((((((..((((.........))))......))))))))...........))))..--.............. ( -21.10)
>consensus
CGAAUUUCCUGCUUACCACUGUGCGAUGCCCACACAUGGCCAGCCCGCUGAAGCUAGCUAAUUUAUCACUGGCAUUCACGCUUCGGUAUUCCCUAUUCCACCUA__UAUCCA______UA
..............(((.(((.((.(((......))).)))))...(((((((((((...........))))).)))).))...)))................................. (-19.24 = -19.40 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:10 2006