Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,648,368 – 17,648,488 |
Length | 120 |
Max. P | 0.960530 |
Location | 17,648,368 – 17,648,488 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -47.60 |
Consensus MFE | -41.30 |
Energy contribution | -41.86 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.71 |
Structure conservation index | 0.87 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17648368 120 - 20766785 CUCGGCGGCCAGGCGCUGUAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAAAUCCACCUCCCUCUCCAUGGCCUCUUUGGCACGGCGUCGACGUAUGCC ...(((((((((((((((.((((.....)))))))))))))....))))))....(((((((((((..(((((....((...........))....)))))..))))).))))))..... ( -46.20) >DroSec_CAF1 2045 120 - 1 CUCGGCGGCCAGGCGCUGCAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAGAUCCACCUCCCUCUCCAUGGCCUCCUUGGCCCGGCGGCGACGUAUGCU ...(((((((((((((((.((((.....)))))))))))))....))))))...((((.((((((((....((......)).........((((.....))))..)))))).)))))).. ( -48.40) >DroSim_CAF1 7961 120 - 1 CUCGGCGGCCAGGCGCUGCAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAGAUCCACCUCCCUCUCCAUGGCCGCCUUGGCCCGGCGGCGACGUAUGCU ...(((((((((((((((.((((.....)))))))))))))....))))))....(((((((...))........................((((((.......)))))))))))..... ( -48.00) >DroEre_CAF1 2079 120 - 1 CUCCGCGGCCAGGUGCUGCAGCUCAUCCAGCUCGGCGUCUGUGAUGCCGCCGUCCAUGUCGCGCUGCAUCAGGUCCACCUCCCUCUCCAUGGCCUCCUUGGCCCGCCGGCGCCGCAUGCU ....((((((((..((((.((((.....))))))))..)))....)))))....(((((.(((((((...(((....)))..........((((.....)))).).)))))).))))).. ( -50.10) >DroYak_CAF1 13252 120 - 1 CUCGGCGGCCAGGUGCUGCAGCUCAUCCAACUCGGCGUCUGUGAUGCCGCCGUCCAUGUCGCGCUGCAUCAGGUCCACCUCCCUCUCCAUGGCCUCCUUGGCUCGGCGACGCCGUAUGCC ...((.((((((((((.((.((.(((......(((((((...)))))))......)))..)))).)))))(((....))).........))))).))..(((.((((...))))...))) ( -45.30) >consensus CUCGGCGGCCAGGCGCUGCAGUUCAUCCAACUCGGCGUCUGUGAUGCCGCCAUCCAUGUCGCGUUGCAUCAGAUCCACCUCCCUCUCCAUGGCCUCCUUGGCCCGGCGGCGACGUAUGCU ...(((((((((((((((.((((.....)))))))))))))....))))))...((((.((((((((...((......))..........((((.....))))..)))))).)))))).. (-41.30 = -41.86 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:05 2006