Locus 5485

Sequence ID 2R_DroMel_CAF1
Location 17,645,950 – 17,646,047
Length 97
Max. P 0.998737
window8750

overview

Window 0

Location 17,645,950 – 17,646,047
Length 97
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 76.12
Mean single sequence MFE -25.64
Consensus MFE -15.74
Energy contribution -15.97
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -2.85
Structure conservation index 0.61
SVM decision value 3.21
SVM RNA-class probability 0.998737
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17645950 97 - 20766785
UAUAUUUGAUAUUUCA----------------AAUCAGUGGCUGCAUUU----AGUUCUGCGUAUUUAUAUAUCAGAAGUGAUUUUUAGAGAACUGAAUGUAGGCCAUGCCAACCAA---
...((((((....)))----------------)))..((((((((((((----((((((......(((...((((....))))...)))))))))))))))).))))).........--- ( -26.00)
>DroSim_CAF1 5467 95 - 1
UAUAUUUGAUAUUUCA----------------AUUUAGUGGCUGCAUUU----AGUUCUGCGUAUUUA--UAUCAGCAAUGAUUUUUAGAGAACUGAAUGUAGGCCAUGCCAACCAA---
.....((((....)))----------------)....((((((((((((----((((((.(.......--.((((....)))).....)))))))))))))).))))).........--- ( -27.82)
>DroYak_CAF1 10837 118 - 1
UAUAUUUGAUAUUUCAAGAAUAAUUCUUUACAAUUCAAUGGCUGCAUUUAUGUAGUUCUGCGUAUUUA--UAUCACAAGUGAAUUUCACCGAACUAAAUGUAGGCCAUUCCAAGUAGCUU
..((((((.........((((...........))))((((((((((((....((((((.(.(.(((((--(.......))))))..).).)))))))))))).)))))).)))))).... ( -23.10)
>consensus
UAUAUUUGAUAUUUCA________________AUUCAGUGGCUGCAUUU____AGUUCUGCGUAUUUA__UAUCAGAAGUGAUUUUUAGAGAACUGAAUGUAGGCCAUGCCAACCAA___
.....................................((((((((((((....((((((............((((....))))......))))))))))))).)))))............ (-15.74 = -15.97 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:02 2006