| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,642,950 – 17,643,059 |
| Length | 109 |
| Max. P | 0.888759 |
| Location | 17,642,950 – 17,643,059 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.97 |
| Mean single sequence MFE | -46.03 |
| Consensus MFE | -34.24 |
| Energy contribution | -35.47 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17642950 109 - 20766785 GAGGAGGUGCGCCUCUUCUCGAUUUGCAUAACUGUUCGUUUAGGCACAGAAGUCGGGGGCUAUGGAUAUGCUUUGGGUC------UGGGUUUGGGCCUGGUUAUGGGAGUUGGC-----A (((((((....)))))))(((((((.((((((((...((((((((.((((..((.(((((.........))))).))))------)).)))))))).)))))))).))))))).-----. ( -40.40) >DroSim_CAF1 2443 114 - 1 GCGGAGGUGCGCCUCUUCUCGAUUUGCAUAACUGUUCGUUUAGGCCCAGAAGUCGGGGGCUAUGGAUAUGCCUUGGGUC------UGGGUUUGGGCCUGGUUAUGGGAGUUGGCAUGGCA (((((((....)))))..(((((((.((((((((...(((((((((((((..((.(((((.........))))).))))------))))))))))).)))))))).)))))))....)). ( -48.10) >DroYak_CAF1 7849 115 - 1 GAGGAGCUGCGCCUCUUCUCGAUUUGCAUAACUGUUCGUUUAGGCCCAGAAGCCGGGGGAUAUGGAUAUGCCAUGGCUCUGGCUUUGGGUUUGGGCCUGGUUAUGGGUGUUGGU-----A ((((((......))))))(((((.(.((((((((...(((((((((((((.(((((((..(((((.....))))).)))))))))))))))))))).)))))))).).))))).-----. ( -49.60) >consensus GAGGAGGUGCGCCUCUUCUCGAUUUGCAUAACUGUUCGUUUAGGCCCAGAAGUCGGGGGCUAUGGAUAUGCCUUGGGUC______UGGGUUUGGGCCUGGUUAUGGGAGUUGGC_____A (((((((....)))))))(((((((.(((((((........(((((((((..(((..((((..((.....))...))))......))).)))))))))))))))).)))))))....... (-34.24 = -35.47 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:59 2006