| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,635,142 – 17,635,232 |
| Length | 90 |
| Max. P | 0.500000 |
| Location | 17,635,142 – 17,635,232 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Mean single sequence MFE | -15.60 |
| Consensus MFE | -12.74 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17635142 90 - 20766785 --------AAUCUCUGUUUAUUGAAAACGGAUACGCAUAUAUACGUGUUCGAUUUUAAAAAU-GAAAAAAAAGCUAAAAAUGCGCGCCAAUAUAUAACU --------......(((.(((((((((((((((((........)))))))).))))......-.........((.......))....))))).)))... ( -14.30) >DroSec_CAF1 24208 95 - 1 UUAAGAUUAAUCUCUGUUUAUUAAAAACGGAUACG----UUUACGUAUUCAAUUUUAAAAAUAGCCAAAAAAGCUGAAAAUGCGCGCCAGUAUAUAACU ((((((((.......((((.....))))(((((((----....)))))))))))))))...((((.......))))...((((......))))...... ( -16.00) >DroSim_CAF1 24361 95 - 1 UUAAGAUUAAUCUAUGUUUAUUGAAAACGGAUACG----UUUACGUAUUCGAUUUUAAAAAUAGCCAAAAAAGCUAAAAAUGCGCGCCAAUUCAUAACU ............((((...((((((((((((((((----....)))))))).)))).....((((.......))))...........)))).))))... ( -16.50) >consensus UUAAGAUUAAUCUCUGUUUAUUGAAAACGGAUACG____UUUACGUAUUCGAUUUUAAAAAUAGCCAAAAAAGCUAAAAAUGCGCGCCAAUAUAUAACU .............((((((.((((((.((((((((........)))))))).))))))))))))........((.......))................ (-12.74 = -13.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:53 2006