| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,866,562 – 2,866,654 |
| Length | 92 |
| Max. P | 0.535690 |
| Location | 2,866,562 – 2,866,654 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.37 |
| Mean single sequence MFE | -23.02 |
| Consensus MFE | -15.46 |
| Energy contribution | -16.02 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2866562 92 + 20766785 UAUCGACAUUCCGGGUCUUGUCACCGGAAGUGAGUCGUGGACCCACACUUCCCACAGGCUCUAUAAAACAGAGGG-----UAUACA---ACACUAGAACU ((((.((.((((((.........))))))))(((((((((...........)))).)))))............))-----))....---........... ( -21.60) >DroGri_CAF1 18904 90 + 1 UAUCCACAUUGCGGGUCUUAUCGCCAGAGGUUAGACGUGGACCGACAGUGCCCACGGGUUCUAUAAAA-A-UUGAUUAUAAAU-UGUUACAAA------- ..(((((.......((((.(((......))).)))))))))..(((((((((....)))..(((((..-.-....))))).))-)))).....------- ( -16.61) >DroSec_CAF1 18157 92 + 1 UAUCCACAUUCCGGGUCUUGUCACCGGAAGUGAGUCGUGGACCCACACUUCCCACAGGCUCUAUAAAACAGAGGA-----UGUACA---ACACUAGAACU (((((((.((((((.........))))))))(((((((((...........)))).)))))...........)))-----))....---........... ( -25.30) >DroSim_CAF1 25043 92 + 1 UAUCCACGUUCCGGGUCUUGUCACCGGAAGUGAGUCGUGGACCCACACUUCCCACAGGCUCUAUAAAACAGAGGA-----UAUACA---ACACUAGAACU (((((((.((((((.........))))))))(((((((((...........)))).)))))...........)))-----))....---........... ( -25.60) >DroEre_CAF1 17550 92 + 1 UAUCCACAUUCCGGGUCUUAUCGCCGGAAGUGAGUCGUGGACCCACACUUCCCACAGGCUCUAUAAAAAAGAGGA-----UUUAUA---ACCCUGGCACU .((((((.(((((((......).))))))))(((((((((...........)))).)))))...........)))-----).....---........... ( -23.60) >DroYak_CAF1 19340 92 + 1 UAUCCACAUUCCGGGUUUUGUCACCGGAAGUGAGGCGUGGACCCACACUCCCCACAGGCUCUAUAAAGGUAUUAA-----AUUACA---AGCCUAGAACU ........((((((.........))))))(((.((.(((......))).)).)))(((((((....))(((....-----..))).---)))))...... ( -25.40) >consensus UAUCCACAUUCCGGGUCUUGUCACCGGAAGUGAGUCGUGGACCCACACUUCCCACAGGCUCUAUAAAACAGAGGA_____UAUACA___ACACUAGAACU .....((.((((((.........))))))))(((((((((...........)))).)))))....................................... (-15.46 = -16.02 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:28 2006