Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,631,749 – 17,631,848 |
Length | 99 |
Max. P | 0.929402 |
Location | 17,631,749 – 17,631,848 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -18.57 |
Energy contribution | -19.80 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.30 |
Mean z-score | -1.99 |
Structure conservation index | 0.64 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17631749 99 + 20766785 GCCGAGUAGAAGCUGCAGGCCCACCAGUUUGGUGGAGCCAAGUCUGAAGAACAAGUUGCGCAAUGGCUCGAAAGGCAAGGCCAAGGCCAAAAAGUAGAU (((((((....((.(((((((((((.....))))).)))...((....))......)))))....))))....)))..(((....)))........... ( -33.40) >DroPse_CAF1 28258 99 + 1 CCCGAGUCGUAAGUGUCGUCCCACCUCGUAUAAAGAGCCAAAAAUAAAUGCAAAAAUGCGCAACGACUCCCUCCCUACCAAAAAGUCUUCGAAAUAGAU ...(((((((..(((......)))(((.......)))...........(((........))))))))))...............((((.......)))) ( -15.30) >DroSec_CAF1 20874 99 + 1 GCCGAGUAGAAGCUGCAGGCCCACCAGUUUGGUGGAGCCAAGUUUGAAGAACAAGAUGCGCAAUGGCUCGAAAGGCAAGGCCAAGGCCAAAAAGUAGAA (((((((....((.(((((((((((.....))))).)))..((((...))))....)))))....))))....)))..(((....)))........... ( -34.60) >DroSim_CAF1 20974 99 + 1 GCCGAGUAGAAGCUGCAGGCCCACCAGUUUGGUGGAGCCAAGUCUGAAGAACAAGAUGCGCAAUGGCUCGAAAGGCAAGGCCAAGGCCAAAAAGUAGAU (((((((....((.((.((((((((.....))))).)))..((((........))))))))....))))....)))..(((....)))........... ( -35.70) >DroEre_CAF1 20848 99 + 1 GCCGAGCAGAAGCUGCAGGCCCACCAGUUUGGUGGAGCCUAGUCUGCGGAACAAGAUGCGUAAUAGCUCGAUAGGCAGGGCUAAGGCCAAGAAGUAGAU (((..(((((......(((((((((.....))))).))))..))))).......((.((......))))....)))..(((....)))........... ( -35.80) >DroYak_CAF1 20694 99 + 1 GCCGAGCAGAAGAUGCAGACCCACCAGUUUGGCGGAGCCUAAUCUGAAAAACAAGAUGCGUAGUGGAUCGAAAGACAAGGCCAAGACCAAAAAGUAGAU (((..(((.....)))....((((..((..(((...)))..((((........))))))...)))).((....))...))).................. ( -19.20) >consensus GCCGAGUAGAAGCUGCAGGCCCACCAGUUUGGUGGAGCCAAGUCUGAAGAACAAGAUGCGCAAUGGCUCGAAAGGCAAGGCCAAGGCCAAAAAGUAGAU ..(((((......(((.((((((((.....))))).)))..((((........))))..)))...)))))........(((....)))........... (-18.57 = -19.80 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:51 2006