| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,631,226 – 17,631,336 |
| Length | 110 |
| Max. P | 0.691447 |
| Location | 17,631,226 – 17,631,336 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -31.54 |
| Consensus MFE | -25.00 |
| Energy contribution | -26.96 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17631226 110 + 20766785 AUGAAGAGAACAAUCGUCUGUUUAGCAUUAUAGAGGAAAAUGGCAGUGAAGGGGAGUCCACAGACUCGUCAUCAUCAUGCGAGGCCAUCUAUUGCGACACAACGUUUGAA ..........(((.(((.(((...(((..(((((((....(.(((((((.((.(((((....))))).)).))))..))).)..)).))))))))...)))))).))).. ( -31.20) >DroSec_CAF1 20351 110 + 1 AUGAGGAGAACAAUCGUCUGUUUAGCAUUAUAGAGGAAAAUGGCAGUGAAGGGGAGUCCGCAGACUCGUCAUCAUCAUGCGAAGCCAUCUACUGCGACACAACGGUUGAA ..........(((((((.(((...(((...((((((....(.(((((((.((.(((((....))))).)).))))..))).)..)).)))).)))...)))))))))).. ( -32.60) >DroSim_CAF1 20451 110 + 1 AUGAGGAGAACAAUCGUCUGUUUAGCAUUAUAGAGGAAAAUGGCAGUGAAGGGGAGUCCGCAGACUCGUCAUCAUCAUGCGAGGCCAUCUACUGCGACACAACGGUUGAA ..........(((((((.(((...(((...((((((....(.(((((((.((.(((((....))))).)).))))..))).)..)).)))).)))...)))))))))).. ( -33.70) >DroEre_CAF1 20328 107 + 1 AUGAGGAGAACAAUCGUCUGUUCAGCAUUAUAGAGGAAAACGGCAGCGAAGGGGAGACCACAGACUCGUC---AUCAUGCGAGGCCAUCUACUGCGACACAACUGUUGAA ...((.(((....((.(((((........))))).))....(((.......((....)).....(((((.---.....)))))))).))).)).(((((....))))).. ( -27.50) >DroYak_CAF1 20171 110 + 1 AUGAAGAGAACAAUCGUCUGUUCAGCAUAAUAGAGGAAAACGCCAGCGAAGGAGAGACCACAGAGUCGUCUUCGUCAUGCGAGGCCAUCUACUGCGACACAACGGUUGAA ..........(((((((.(((...(((...((((((....(((..(((((((...(((......))).)))))))...)))...)).)))).)))...)))))))))).. ( -32.70) >consensus AUGAGGAGAACAAUCGUCUGUUUAGCAUUAUAGAGGAAAAUGGCAGUGAAGGGGAGUCCACAGACUCGUCAUCAUCAUGCGAGGCCAUCUACUGCGACACAACGGUUGAA ..........(((((((.(((...(((...((((((....(.(((((((.((.(((((....))))).)).))))..))).)..)).)))).)))...)))))))))).. (-25.00 = -26.96 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:50 2006