Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,630,583 – 17,630,679 |
Length | 96 |
Max. P | 0.589343 |
Location | 17,630,583 – 17,630,679 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -30.73 |
Consensus MFE | -24.65 |
Energy contribution | -24.60 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.28 |
Mean z-score | -2.04 |
Structure conservation index | 0.80 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17630583 96 + 20766785 GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAAGUGCAGAAGCAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((..((...((((((((.......))))))))..))..)).......)))...... ( -31.90) >DroSec_CAF1 19708 96 + 1 GAUCCAAAGUGGAGCACCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAAAAACAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((.....)))((.((.((((...((((.....)))).((..((...((((((((.......))))))))..))..))..)))).))..))... ( -30.80) >DroSim_CAF1 19808 96 + 1 GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAAAAGCAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((..((...((((((((.......))))))))..))..)).......)))...... ( -31.60) >DroEre_CAF1 19676 96 + 1 GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUCAUGGACCAGGUGCAGAAGCAGCGCCUGGAGAUUGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((.((....((((((((.......))))))))....)))).......)))...... ( -34.40) >DroYak_CAF1 19513 96 + 1 GAUCCAAGGUAGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAGAAGCAGCGCCUGGAGAUCGGCGAGUACAGGAAGCGGG ..(((...(((...(((((((....)))))))..)))...((..((...((((((((.......))))))))..))..)).......)))...... ( -35.40) >DroPer_CAF1 26823 96 + 1 GUACAAACAUAGAGCAGCAAUACAAAAUAUUGAAUGCUGAACUGAUGGACCACGUACAGAAACUACGUGUGGAGUUGGGGGAGUACAAAAAGCUGG ((((..........(((((...(((....)))..)))))..(..((...(((((((.......)))))).)..))..)....)))).......... ( -20.30) >consensus GAUCCAAAGUGGAGCAGCAGUACAAGCUGCUGAAUGCGGAGCUAAUGGACCAGGUGCAGAAGCAGCGCUUGGAGAUCGGCGAGUACAGGAAGCGGG ...((.........(((((((....)))))))..(((...(((.((...((((((((.......))))))))..)).)))..)))........)). (-24.65 = -24.60 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:49 2006