Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,616,763 – 17,616,866 |
Length | 103 |
Max. P | 0.780440 |
Location | 17,616,763 – 17,616,866 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 97.41 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -27.14 |
Energy contribution | -27.03 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.79 |
Structure conservation index | 0.97 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17616763 103 + 20766785 AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACGAAGACAGAUAGGGUGAAAAGGGUGGCCCGAGUUCAAGCGAGCAACAAAUGCACUGCGCAAA .........(((((((.(((..((((.((((...(((....)))...)))).((((.(......).))))...)))).))).(((.....))).))))))).. ( -27.90) >DroSec_CAF1 5955 103 + 1 AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACAAUGACAGAUAGGGUGAAAAGGGUGGCCCGAGCUCAAGCAAGCAACAAAUGCACUGCGCAAA .........(((((((((....((((.((((..(((.....)))...)))).((((.(......).))))...)))).))..(((.....))).))))))).. ( -28.10) >DroSim_CAF1 5951 103 + 1 AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACAAUGACAGAUAGGGUGAAAAGGGUGGCCCGAGCUCAAGCAAGCAACAAAUGCACUGCGCAAA .........(((((((((....((((.((((..(((.....)))...)))).((((.(......).))))...)))).))..(((.....))).))))))).. ( -28.10) >consensus AGGUGAGACUGCGCAGGCGCAGUGAGAAUCUUAAUUUAAACAAUGACAGAUAGGGUGAAAAGGGUGGCCCGAGCUCAAGCAAGCAACAAAUGCACUGCGCAAA .........(((((((((....((((.((((..(((.....)))...)))).((((.(......).))))...)))).))..(((.....))).))))))).. (-27.14 = -27.03 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:46 2006