| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,612,400 – 17,612,515 |
| Length | 115 |
| Max. P | 0.730419 |
| Location | 17,612,400 – 17,612,515 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.28 |
| Mean single sequence MFE | -39.58 |
| Consensus MFE | -23.54 |
| Energy contribution | -23.68 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17612400 115 + 20766785 -UAUCUUAUUAUAGACCAACUCGGAGUUUGAGCUGCUUACCUCAGAGUUUGACAUGGUGGAGCUGCAGCAAAUGGUGGCCCAGCUGUGUCAACUAGCUCGAGAGCCGGGUCUGGAU -..(((......)))(((((((((..((((((((((((......))))((((((((((((.((..(........)..))))).)))))))))..))))))))..)))))).))).. ( -46.20) >DroVir_CAF1 1478 116 + 1 UUAUCUACUGGCAGACCAAUUCGGAUUUCGAGCUGAUCCACUCCAACUUUGACAUGGCCGAGCUGAAGCAAAUGGUUUCCCAAUUAUGUCAGUUGCCCCGCGAGCCAGGACUCAAU .......(((((..........(((((.......)))))....(((((..(((((((....((....))...(((....))).))))))))))))........)))))........ ( -27.50) >DroPse_CAF1 6346 115 + 1 -UUUCUCUCCGCAGACGAACUCCGAAUUUGAGUUGCUCGCCUCGGACUUUGACAUGGCGGAGCUGCAGCAGAUGGUGGCCCAGCUCUGCCAACUGGCGCGGGAGCCUGGUCUGGAU -...((((((((((.((((.(((((...((((...))))..))))).))))...(((((((((((..((........)).))))))))))).)).))).)))))((......)).. ( -45.00) >DroGri_CAF1 11121 114 + 1 -UC-UUCCUCACAGACCAAUUCGGACUUUGAGCUAAUCACCUCGAACUUUGACAUGGCGGAGCUGCAACAAAUGGUUGCCCAACUUUGUCAAUUGCCCCGCGAACCCGGUCUCAAU -..-........(((((...(((((.((((((........)))))).)))))....((((.((....((((((((....)))..))))).....)).))))......))))).... ( -28.70) >DroMoj_CAF1 17191 115 + 1 -UCUCUACUCAAAGACCAACUCGGAAUUUGAGCUGCUGAGCUCGAAUUUCGAAAUGGGCGAGCUGCAGCAAAUGGUUGCUCAGCUCUGUCAACUGCCACGCGAGCCCGGACUGAAU -...........((.((...((((((((((((((....))))))))))))))...((((((((((.(((((....))))))))))).......(((...))).)))))).)).... ( -45.10) >DroPer_CAF1 6315 115 + 1 -UUUCUCUCCGCAGACGAACUCCGAAUUUGAGUUGCUCGCCUCGGACUUUGACAUGGCGGAGCUGCAGCAGAUGGUGGCCCAGCUCUGCCAACUGGCGCGGGAGCCUGGUCUGGAU -...((((((((((.((((.(((((...((((...))))..))))).))))...(((((((((((..((........)).))))))))))).)).))).)))))((......)).. ( -45.00) >consensus _UAUCUCCUCACAGACCAACUCGGAAUUUGAGCUGCUCACCUCGAACUUUGACAUGGCGGAGCUGCAGCAAAUGGUGGCCCAGCUCUGUCAACUGCCCCGCGAGCCCGGUCUGAAU ............(((((..((((...((((((........))))))........((((((((((((.((.....)).))..)))))))))).........))))...))))).... (-23.54 = -23.68 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:45 2006