Locus 5471

Sequence ID 2R_DroMel_CAF1
Location 17,609,531 – 17,609,634
Length 103
Max. P 0.841317
window8731

overview

Window 1

Location 17,609,531 – 17,609,634
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 81.52
Mean single sequence MFE -21.28
Consensus MFE -16.54
Energy contribution -17.30
Covariance contribution 0.76
Combinations/Pair 1.11
Mean z-score -1.84
Structure conservation index 0.78
SVM decision value 0.75
SVM RNA-class probability 0.841317
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17609531 103 - 20766785
AAAUCAUUAAUAACAUAAACAAUUUGGCAAAUCAGCAAUUGCGAGAGUUGUUUCGUUUAUUGGCGGCAUUCUUUUGGAAUGAUGUGUUGAUGUGUUGUUUUAC
........(((((((((((((((((.((((........))))..))))))))).....((..(((.(((((.....)))))...)))..)))))))))).... ( -23.80)
>DroSec_CAF1 24205 98 - 1
AAAUCAUUAAUAACAUAAACAAUUUGGCAAAUCAGCAAUUGCGAGAGUUGUUUCGCUUAUUGAUGGCAUUCUUUUGGAAUGAUGUGUU-----GUCGUUUUAC
...((((((((((...(((((((((.((((........))))..)))))))))...))))))))))........(((((((((.....-----))))))))). ( -23.50)
>DroSim_CAF1 24990 98 - 1
AAAUCAUUAAUAACAUAAACAAUUCGGCAAAUCAGCAAUUGCGAGAGUUGUUUCGUUUAUUGGUGGCAUUCUUUUGGAAUGAUGUGUU-----GUCGUUUUAC
...((((((((((...(((((((((.((((........))))..)))))))))...))))))))))........(((((((((.....-----))))))))). ( -24.90)
>DroEre_CAF1 25971 83 - 1
AAAUCAUUAAUAACAUAAACAAUUUGGCAAAUCAGUAAUUGCGCGAGUUGUUUCGUUUAUGGGUGGCAUUCUUUUGGAAUGAU--------------------
...((((..((((...((((((((((((((........)))).))))))))))...))))..))))(((((.....)))))..-------------------- ( -20.80)
>DroYak_CAF1 26021 83 - 1
AAAUCAUUAAUAACAUAAACAAUUUGGCAAAUCAGUAAUUGCGAGUGAUGUUUCCUUUAUUGGUGGCAUACCUUUCAUUUAAU--------------------
...((((((((((...(((((..((.((((........)))).))...)))))...)))))))))).................-------------------- ( -13.40)
>consensus
AAAUCAUUAAUAACAUAAACAAUUUGGCAAAUCAGCAAUUGCGAGAGUUGUUUCGUUUAUUGGUGGCAUUCUUUUGGAAUGAUGUGUU_____GU_GUUUUAC
...((((((((((...(((((((((.((((........))))..)))))))))...))))))))))(((((.....)))))...................... (-16.54 = -17.30 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:43 2006