Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,606,982 – 17,607,073 |
Length | 91 |
Max. P | 0.939061 |
Location | 17,606,982 – 17,607,073 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 83.86 |
Mean single sequence MFE | -35.85 |
Consensus MFE | -22.20 |
Energy contribution | -22.32 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.83 |
Structure conservation index | 0.62 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17606982 91 + 20766785 AGAGGGUGCUAUGCGCGGAGGGCGGCGGUG------------CGAGCGAGCAAGAGCGAUGGAGAUCGUAGGUCGUAUCU--GGGAGAUGCGCGAUGCGCUCGAG ...((((((..(((((.....(((((..((------------(......)))...(((((....)))))..)))))(((.--....))))))))..))))))... ( -31.70) >DroSec_CAF1 21684 85 + 1 AGAGGGUGCUAUGCGCGGAGGGCGG--GUG------------CGAGCGAGCGAG----GUGGAGAUCGUAGGUCGUAUCU--GGGAGAUGCGCGAUGCGCUCGAG ...((((((..((((((.....(((--(((------------(((.(..((((.----.......)))).).))))))))--).....))))))..))))))... ( -37.20) >DroSim_CAF1 22443 85 + 1 AGAGGGUGCUAUGCGCGGAGGGCGG--GUG------------CGAGCGAGCGAG----GUGGAGAUCGUAGGUCGUAUCU--GGGAGAUGCGCGAUGCGCUCGAG ...((((((..((((((.....(((--(((------------(((.(..((((.----.......)))).).))))))))--).....))))))..))))))... ( -37.20) >DroYak_CAF1 23359 99 + 1 AGAGGGUGCUAUGCGCGGACGGCGG--GUGCAAGCGAUCGAGCGAGCGAACGAG----CUGAAGAUCGUAGUUCGAAGUUUGGGGAGAUGCGCGUUGCGCUCGAG ...((((((.(((((((.....(..--.(.(((((..((((((..((((.(...----.....).)))).)))))).))))).)..).))))))).))))))... ( -37.30) >consensus AGAGGGUGCUAUGCGCGGAGGGCGG__GUG____________CGAGCGAGCGAG____GUGGAGAUCGUAGGUCGUAUCU__GGGAGAUGCGCGAUGCGCUCGAG ...((((((..(((((..........................(((.(..((((............)))).).))).((((.....)))))))))..))))))... (-22.20 = -22.32 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:39 2006