| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,606,448 – 17,606,542 |
| Length | 94 |
| Max. P | 0.574144 |
| Location | 17,606,448 – 17,606,542 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.27 |
| Mean single sequence MFE | -24.72 |
| Consensus MFE | -14.88 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17606448 94 - 20766785 ----UAUAGA-UAUAAACUAAGGCGAUUGCAAUUGCGAUUGCGAUUGCGCUAUCGG-AUCGCAUAUUCAAUUCGCACCAGCAUGCGAAUCGGAUUUUUGA-- ----......-...........((((((((((((((....)))))))).(....))-)))))..((((.(((((((......))))))).))))......-- ( -26.00) >DroSec_CAF1 21175 93 - 1 ----UAUAGA-UAUUAACUAAGGCGAUUGCAAUUGCGAUUGCGAUUGCGCUAUCGG-AUCGCAUAUUCAAUUCGCACCAGCAUGCGAAUCGGAUU-UUGA-- ----......-...........((((((((((((((....)))))))).(....))-)))))..((((.(((((((......))))))).)))).-....-- ( -26.00) >DroSim_CAF1 21910 94 - 1 ----UAUAGA-UAUUAACUAAGGCGACUGCAAUUGCGAUUGCGAUUGCGCUAUCGG-AUCGCAUAUUCAAUUCGCACCAGCAUGCGAAUCGUAUUUUUGA-- ----...(((-(((........((((((((((((((....))))))))......))-.)))).......(((((((......))))))).))))))....-- ( -22.30) >DroEre_CAF1 22968 88 - 1 ----UAUAGA-UAUAAACUAAGGCGAUUGCAAUUGC------GAUUGCGCUACCGG-AUCGCAUAUUCAAUUUGCACCAGCAUGCGAAUCAGAUUUCUGA-- ----..((((-.........((((((((((....))------)))))).))...((-.(((((.........(((....)))))))).)).....)))).-- ( -21.10) >DroYak_CAF1 22818 92 - 1 UCUAUAUAGC-UAUAAACUAAGGCGAUUGCAAUUGC------GAUUGCGCUACCGG-UUCGCAUAUUCAAUUUGCACCAGCAUGCGAAUCGGAUUUUUGA-- ..........-.........((((((((((....))------)))))).)).((((-((((((.........(((....)))))))))))))........-- ( -28.60) >DroAna_CAF1 21671 96 - 1 ----AAAAAUUCAAAAGCCAAAAAAAUUGCAAUUACAAUGGCGAUUGCAUUAUCGGCGUCGCA--UUCAAUUUGCACCAGCAUGCGAGUCCGAUAUUUGAUC ----......(((((............((((((..(....)..)))))).((((((..(((((--.......(((....))))))))..))))))))))).. ( -24.31) >consensus ____UAUAGA_UAUAAACUAAGGCGAUUGCAAUUGCGAUUGCGAUUGCGCUAUCGG_AUCGCAUAUUCAAUUCGCACCAGCAUGCGAAUCGGAUUUUUGA__ ......................((((((((((((........)))))))........)))))..((((.(((((((......))))))).))))........ (-14.88 = -15.77 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:38 2006