Locus 5466

Sequence ID 2R_DroMel_CAF1
Location 17,604,562 – 17,604,660
Length 98
Max. P 0.945163
window8722

overview

Window 2

Location 17,604,562 – 17,604,660
Length 98
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 94.51
Mean single sequence MFE -22.88
Consensus MFE -19.90
Energy contribution -19.74
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.87
SVM decision value 1.35
SVM RNA-class probability 0.945163
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17604562 98 + 20766785
-GUGAUUGGCUCAAAAAUGUCAAGGGGCAAGUUGACUAAAACGGAAACCGAACUCUCCCAUAAAUGAAUAAAUAUUUGCGGUUUAGAAUGGCCCCAGAA
-....(((((........)))))(((((..(((......)))..((((((..........((((((......))))))))))))......))))).... ( -21.50)
>DroSec_CAF1 19320 98 + 1
-GUGAUUGGCUCAAAAAUGUCAAGGGGCAAGUUGACUAAAACGGAAACCGAACUCUCCCAUAAAUGAAUAAAUAUUUGCGGCUUAGAAUGGCCCCAGAA
-....(((((........)))))(((((.............(((...)))...(((.((.((((((......)))))).))...)))...))))).... ( -20.90)
>DroSim_CAF1 20065 98 + 1
-GUGAUUGGCUCAAAAAUGUCAAGGGGCAAGUUGACUAAAACGGAAACCGAACUCUCCCAUAAAUGAAUAAAUAUUUGCGGCUUAGAAUGGCCCCAGAA
-....(((((........)))))(((((.............(((...)))...(((.((.((((((......)))))).))...)))...))))).... ( -20.90)
>DroEre_CAF1 21021 98 + 1
-AUGAUUGGCUCAAAAAUGUCAAGGGGCAAGCUGACUGAAACGGAAACCGAACUCUCCCAUAAAUGAAUAAAUAUUUAUGGCUUAGAAUGGCCCCAGAA
-....(((((........)))))(((((...((((......(((...))).......(((((((((......))))))))).))))....))))).... ( -27.00)
>DroYak_CAF1 20876 99 + 1
UAUGAUUGGCUUAAAAAUGUCAAGGGGCAGGCUGACUGAAACGGAAACCAAACUCUCCCAUAAAUGAAUAAAUAUUUAUGGCUUAAAAUGGCCCCAGAA
.....(((((........)))))(((((.((.(..(......)..).))........(((((((((......))))))))).........))))).... ( -24.10)
>consensus
_GUGAUUGGCUCAAAAAUGUCAAGGGGCAAGUUGACUAAAACGGAAACCGAACUCUCCCAUAAAUGAAUAAAUAUUUGCGGCUUAGAAUGGCCCCAGAA
.....(((((........)))))(((((...((((.......(....).........((.((((((......)))))).)).))))....))))).... (-19.90 = -19.74 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:35 2006