Locus 5464

Sequence ID 2R_DroMel_CAF1
Location 17,599,091 – 17,599,200
Length 109
Max. P 0.961401
window8720

overview

Window 0

Location 17,599,091 – 17,599,200
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 95.87
Mean single sequence MFE -29.54
Consensus MFE -26.72
Energy contribution -26.72
Covariance contribution 0.00
Combinations/Pair 1.10
Mean z-score -1.61
Structure conservation index 0.90
SVM decision value 1.53
SVM RNA-class probability 0.961401
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17599091 109 + 20766785
CGAGACUUUUUAUUGUGCAAGUACUGUGGUGACCCGCGGGUCAGUUACUUUACUUAGCUCUAGCAUAGGUACAUGUACAUGGGCUAUAAAUAAUUUAAAGUAUUUGCGA
((..(((((..((((((((((((..(((((((((....))))).))))..))))).))..((((....(((....)))....))))...)))))..))))).....)). ( -30.00)
>DroSec_CAF1 13873 109 + 1
CGAGACUUUUUAUUGUGCAAGUACUGUGGUGACCCGCGGGUCAGUUAGUUUACUUAGCUCUAGCAUAGGUACAUGUACAUGGGCUAUAAAUAAUUUAAAGUAUUUGCGG
...............((((((((((....(((((....)))))....(((((..((((((..((((......))))....))))))))))).......)))))))))). ( -28.80)
>DroSim_CAF1 14629 109 + 1
CGAGACUUUUUAUUGUGCAAGUACUGUGGUGACCCGCGGGUCAGUUACUUUACUUAGCUCUAGCAUAGGUACAUGUACAUGGGCUAUAAAUAAUUUAAAGUAUUUGCGG
((..(((((..((((((((((((..(((((((((....))))).))))..))))).))..((((....(((....)))....))))...)))))..))))).....)). ( -30.20)
>DroEre_CAF1 15452 108 + 1
CGAGACUUUUUAUUGCGCAAGUAUUGUGGCGACCCGCGGGUCAGUUAC-UUACUUAGCUCUAGCAUAGGUACAUGUACAUGGGCUAUAAAUAAUUUAAAGUAUUUGCGG
...............(((((((((((((((((((....)))).)))))-.....((((((..((((......))))....))))))............)))))))))). ( -31.00)
>DroYak_CAF1 15194 108 + 1
CGAGACUUUUUAUUACGCAAGUAUUGUGGUGACCCGCCGGUCAGUUAU-UUACUUAGCUCUACCAUAGGUACAUGUACAUGGGCUAUAAAUAAUUUAAAGUAUUUGCGG
...............((((((((((....(((((....)))))(((((-(((..((((((((((...)))).........))))))))))))))....)))))))))). ( -27.70)
>consensus
CGAGACUUUUUAUUGUGCAAGUACUGUGGUGACCCGCGGGUCAGUUACUUUACUUAGCUCUAGCAUAGGUACAUGUACAUGGGCUAUAAAUAAUUUAAAGUAUUUGCGG
...............(((((((((((((((((((....))))).))))......((((((..((((......))))....))))))............)))))))))). (-26.72 = -26.72 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:32 2006