| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,598,638 – 17,598,732 |
| Length | 94 |
| Max. P | 0.998085 |
| Location | 17,598,638 – 17,598,732 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.92 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -16.34 |
| Energy contribution | -15.57 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.67 |
| SVM decision value | 3.00 |
| SVM RNA-class probability | 0.998085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17598638 94 - 20766785 UCAUUGCUGGGAUACUCAUGAUGCUUGGCGAUAGACUGGCAAGUUCAAAGUUUACCUUAUAUGGCUGAAU-AUUUUUUGUAU-UUUGUUUCAGCAG ....(((((..(((....(((.(((((.((......)).))))))))..(((((((......)).)))))-...........-..)))..))))). ( -23.20) >DroEre_CAF1 14794 96 - 1 UAAUUGCUGGAAUACUUAUGAUGCUUGGCGCUAAAAGGGCAAGUACAAAGUAUGCCUUCCCAGGCGGAAUUAUUUUUAGUACGAUUAUUGCAGCAG ....(((((.(((((((.((.((((((.(........).))))))))))))))((((....)))).......................).))))). ( -24.50) >DroYak_CAF1 14573 93 - 1 UUACUGCUGGAAUAUGUAUGAUGCUUGGCAUAAAAAAGGCAAGUUGAAAGUAUAAAUUCUAACCCGGAAUUG---UAAGUACUAUUAUUUCAGCAG ...(((((((((((........(((((.(........).)))))....(((((.((((((.....)))))).---...)))))..))))))))))) ( -25.50) >consensus UAAUUGCUGGAAUACUUAUGAUGCUUGGCGAUAAAAAGGCAAGUUCAAAGUAUACCUUCUAAGGCGGAAUUAUUUUUAGUAC_AUUAUUUCAGCAG ...(((((((((((........(((((.(........).)))))............(((......))).................))))))))))) (-16.34 = -15.57 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:31 2006