| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,594,951 – 17,595,042 |
| Length | 91 |
| Max. P | 0.917700 |
| Location | 17,594,951 – 17,595,042 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 72.63 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -10.32 |
| Energy contribution | -10.52 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.38 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.917700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17594951 91 + 20766785 ---CAAAUCACUAGCCAAUUGAUUGGCGCUAUAAUGGGUUGUUGCCAG-------GAAACUGGCGCCA-CC--AAAUGGGUUAGCAAUCGAUAACAAA--ACAACC ---..........(((((....))))).........((((((((((((-------....)))))((.(-((--.....)))..))............)--)))))) ( -29.60) >DroVir_CAF1 15015 93 + 1 GUUCCAAACAAACGGUAAUUGAUUUGCCAUU---UGCCCUGUUGCCAG-------GAGACUGAGGCCAACUAUAUUUGGGCCAACAAUCGAUAACAAA---CAAUC (((.....((((.(((((.....))))).))---))...(((((.(((-------....))).((((...........)))).........)))))))---).... ( -21.40) >DroPse_CAF1 11475 99 + 1 GCGCCAAACAAACGGUAAUUGAUUCGCCCGU---UGAACUGUUGCCAGGGGAACGGAAACUGGCGCCU-UU---CAUGGGUCAACAAUCGAUACCAAAUAACAAUC .............((((.((((((.((((((---.(((..((.(((((...........)))))))..-))---)))))))....))))))))))........... ( -27.00) >DroSec_CAF1 10961 91 + 1 ---CAAAUCACUCGCCGAUUGAUUGGCGCUAUAAUGGGCUGUUGCCAG-------GAAACUGGCGCCU-CC--AAAUGGGUUAGCAAUCGAUAACAAA--ACAACC ---............((((((.(((((.((((...((((....(((((-------....)))))))))-..--..)))))))))))))))........--...... ( -29.10) >DroSim_CAF1 11689 91 + 1 ---CAAUUCACUCGCCGAUUGAUUGGCGCUAUAAUGGGCUGUUGCCAG-------GAAACUGGCGCCU-CC--AAAUGGGUUAGCAAUCGAUAACAAA--ACAACC ---............((((((.(((((.((((...((((....(((((-------....)))))))))-..--..)))))))))))))))........--...... ( -29.10) >DroPer_CAF1 11508 98 + 1 GCGCCAAACAAAUGGUAAUUGAUUCGCCCGU---UGAACUGUUGCCAGGGGAACGGAAUCUGGCGCCU-UU---GAUGGGUCAACAAUCGAUACCAAAUAACAA-C ............(((((.((((((.((((((---..((..((.((((((.........)))))))).)-).---.))))))....)))))))))))........-. ( -28.90) >consensus ___CAAAACAAACGCCAAUUGAUUGGCCCUA___UGGGCUGUUGCCAG_______GAAACUGGCGCCU_CC__AAAUGGGUCAACAAUCGAUAACAAA__ACAACC .................(((((((...................(((((...........)))))(((...........)))....))))))).............. (-10.32 = -10.52 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:30 2006