| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,588,247 – 17,588,338 |
| Length | 91 |
| Max. P | 0.581305 |
| Location | 17,588,247 – 17,588,338 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.65 |
| Mean single sequence MFE | -21.75 |
| Consensus MFE | -8.93 |
| Energy contribution | -10.93 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17588247 91 + 20766785 AAAAUUAAAAGAAUCAAAAACUUUGUGGUAUUAAAUUAACCCCAAAUUUGAGCUCAUUUGAGCUAUUACGAAGUGC---------------ACAAAAUAACUUAA--------------C ...................((((((((((((((((((.......)))))))((((....)))))))))))))))..---------------..............--------------. ( -17.20) >DroSim_CAF1 4322 106 + 1 AAAAUUCAAGGAAUCGAAAACUUGGUGGUAAAAAAUUAACUCCAAAUGUAAGCUCAUUUGAGCUAUUACUAAGUGCGAGUUAAAGUUUAUCACAAAAUAAAUUAG--------------C ......((((..........))))((((((((...(((((((((...((((((((....)))))..)))....)).)))))))..))))))))............--------------. ( -27.50) >DroEre_CAF1 4182 120 + 1 AAAAUUCAAGGAAUCGACAACCUUGUGGUAAAAAAUAAACAGCAAAUUUAAACUCAUUUCAGUUAUUACUAAGUGCGAGUUAAAGUUUAUCACGAAAUUGAGUAGCAGUGCCUGCUUUGC ...((((((((.........))((((((((((...(((...(((......((((......)))).........)))...)))...))))))))))..))))))(((((...))))).... ( -20.56) >consensus AAAAUUCAAGGAAUCGAAAACUUUGUGGUAAAAAAUUAACACCAAAUUUAAGCUCAUUUGAGCUAUUACUAAGUGCGAGUUAAAGUUUAUCACAAAAUAAAUUAG______________C .............(((...((((((((((...(((((.......))))).(((((....))))))))))))))).))).......................................... ( -8.93 = -10.93 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:30 2006