Locus 5458

Sequence ID 2R_DroMel_CAF1
Location 17,567,339 – 17,567,454
Length 115
Max. P 0.577787
window8712

overview

Window 2

Location 17,567,339 – 17,567,454
Length 115
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.38
Mean single sequence MFE -31.72
Consensus MFE -19.30
Energy contribution -20.11
Covariance contribution 0.81
Combinations/Pair 1.28
Mean z-score -1.47
Structure conservation index 0.61
SVM decision value 0.09
SVM RNA-class probability 0.577787
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17567339 115 - 20766785
UAUUUUUUCCUAGUUCUGGGUAUAUUCCUGGAGGAUCCUGAAAACUUUUCCGCCUUAGCCGAGAUCUUCAGACAGGAUCCAUGCCGUCCGCAAUUCCCGUUGCAUUUGUGGCAUC
..............((..((......))..))((((((((......((((.((....)).))))........))))))))((((((...(((((....))))).....)))))). ( -33.44)
>DroSec_CAF1 73811 115 - 1
UAUUUUCUCCUAGUUCUGGGUAUAUUCCUGGAGGAUCCUGAAAACUUUUCCGCCUUGGCCGAGAUCUUCAGGCAGGAUCCAUGCCGUCCGCACUAUCCUUCGCAUUUGUGGCACC
..............((..((......))..))((((((((......((((.((....)).))))........)))))))).(((((...((..........)).....))))).. ( -31.84)
>DroSim_CAF1 63362 115 - 1
UAUUUUCUCCUAGUUUUGGGUAUCUUCCUGGAGGAUCCUGAAAACUUUUCCGCCUUGGCCGAGAUCUUCAGGCAGGAUCCAUGCCGUCCGCACUAUCCUUCGCAUUUGUGGCACC
..............((..((......))..))((((((((......((((.((....)).))))........)))))))).(((((...((..........)).....))))).. ( -30.04)
>DroEre_CAF1 84581 115 - 1
UAUUUUGUGCCAGUUCUGGGUAUAUUCCUGGAGGAUCCUGAAAACUUUUCCGCCUUGGCUGAGAUCUUCAGGCAGGAUCCGUGCCGUCCGCAUUAUCCUUUGCAUUUGUGGCACC
......((((((..((..((......))..))((((((((......((((.((....)).))))........)))))))).........(((........))).....)))))). ( -39.34)
>DroWil_CAF1 123230 114 - 1
CAUCUUCUG-CAGUUCUAGGUAUUGUAAUGAAAGAUGCAGAAAAUUUUGGCUUUUUGGCUAAGAUUUUUCUUCAGGAUCCCUGUCAGCCUUUAUAUCCACCACAUCUCUGGCAUC
.....((((-((.(((.............)))...))))))(((((((((((....))))))))))).....((((...))))...(((....................)))... ( -24.47)
>DroAna_CAF1 73671 115 - 1
UUUCCCCUCUUAGUUUUGGGUAUUGUCUUGGAGGAUCCCGAAAACUUUAUGGCCCUGGCUGCGAUUUUCAAGCAGGAUCCUUGUCGACCGCACUAUCCACGCCACUUGUGGCAUC
................((((((.(((.(((((((((((............(((....)))((.........)).))))))))..)))..))).)))))).((((....))))... ( -31.20)
>consensus
UAUUUUCUCCUAGUUCUGGGUAUAUUCCUGGAGGAUCCUGAAAACUUUUCCGCCUUGGCCGAGAUCUUCAGGCAGGAUCCAUGCCGUCCGCACUAUCCUUCGCAUUUGUGGCACC
..............((((((......))))))((((((((......((((.((....)).))))........)))))))).(((((......................))))).. (-19.30 = -20.11 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:25 2006