| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,559,572 – 17,559,674 |
| Length | 102 |
| Max. P | 0.786004 |
| Location | 17,559,572 – 17,559,674 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.99 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -14.64 |
| Energy contribution | -15.03 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.61 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17559572 102 - 20766785 UCCUAUUUUUCCUAUUUUCCUCUCCCCCUUUUUUUUUUUUUUUUGUUGAUUUACUUUUGCACUG--CGCAAAUUGAAUCAAAUGCAAUGGAAAAGGAGGA-CGAC ....................(((((.((((((((...........((((((((..(((((....--.))))).)))))))).......)))))))).)))-.)). ( -21.47) >DroSec_CAF1 66281 93 - 1 UCCUAUUUUUCCUAUUUUCCUCUCCCCUUUU---------UUUUGUUGAUUUACUUUUGCUCUG--CGCAAAUUGAAUCAAAUGCAAUGGAAAAGGGGGG-CGAC ...................(.((((((((((---------(((((((((((((..(((((....--.))))).)))))))...)))).))))))))))))-.).. ( -28.70) >DroSim_CAF1 55766 94 - 1 UCCUAUUUUUCCCAUUUUCCUCUCCCCUUUU--------UUUUUGUUGAUUUACUUUUGCUCCG--CGCAAAUUGAAUCAAAUGCAAUGGAAAAGGGGGG-CGAC ...................(.((((((((((--------(..(((((((((((..(((((....--.))))).)))))))...))))..)))))))))))-.).. ( -30.70) >DroEre_CAF1 74221 94 - 1 UCCUAUUUUUCCUAUUUUCCUCUCCACU-UU--------UUUUUGUUGAUUUACUUUUGCUCUG--CGCAAAUUGAAUCAAAUGCAAUGGAAAAGGGGGGCCGAC ....................(((((.((-((--------((((((((((((((..(((((....--.))))).)))))))...)))).))))))))))))..... ( -21.80) >DroYak_CAF1 69476 86 - 1 UCCU---------AUUUUCCUCUCCACUCUU--------UUUUUGUUGAUUUACUUUUGCUCUG--CGCAAAUUGAAUCAAAUGCAAUGGAAAAGAGGGGCCGAC ....---------.........(((.(((((--------((((((((((((((..(((((....--.))))).)))))))...))))..)))))))))))..... ( -21.60) >DroAna_CAF1 67591 90 - 1 UCCUAU---------UUUGCUCUUCCAUUUU-----UGCUUUUUGUUGAUUUACUUUUGCUCUGCUCGCAAAUUGAAUCAAAUGCAAUGGGAAAGGAGGA-GGAG ......---------....(((((((.((((-----(.((..(((((((((((..(((((.......))))).)))))))...)))).)).))))).)))-)))) ( -25.40) >consensus UCCUAUUUUUCCUAUUUUCCUCUCCCCUUUU________UUUUUGUUGAUUUACUUUUGCUCUG__CGCAAAUUGAAUCAAAUGCAAUGGAAAAGGGGGG_CGAC .......................((((((((..............((((((((..(((((.......))))).))))))))...........))))))))..... (-14.64 = -15.03 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:23 2006