| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,559,262 – 17,559,353 |
| Length | 91 |
| Max. P | 0.515344 |
| Location | 17,559,262 – 17,559,353 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 82.72 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -12.14 |
| Energy contribution | -11.42 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17559262 91 + 20766785 UUCAGUUGUCCUUUUUAGUUGACUUUGUGUUAACUAAACUUAUUAAAGUAUGCUUGACAUUCACUGAUUCUGAUUCGGAUUG-----------UCUGCUCUG .(((((((((...((((((((((.....)))))))))).......(((....)))))))...)))))........((((...-----------.....)))) ( -18.00) >DroPse_CAF1 78667 102 + 1 CUUGGCUCAAGUUCUCAGUUGGCUUUCUGUUAACUAAACUUAUUAAAGUUUGUUUGACAUUCACUGAUUCAGAUUCAGAUUCUGAUGCUCAACUCUGCUCUU ........(((..(..(((((((....((((((.(((((((....))))))).)))))).........(((((.......))))).)).)))))..)..))) ( -21.50) >DroSec_CAF1 65981 91 + 1 UUCAGUUGUCCUUUUUAGUUGACUUUGUGUUAACUAAACUUAUUAAAGUAUGCUUGACAUUCACUGAUUCUGAUUCAGAUUG-----------UCAGCUCUG .(((((((((...((((((((((.....)))))))))).......(((....)))))))...)))))..(((((.......)-----------))))..... ( -20.70) >DroEre_CAF1 73915 91 + 1 UUCAGUUGUCCUUUUUGGUUGACUUUCUGUUAACUAAACUUAUUAAAGUAUGCUUGACAUUCACUGAUUCUGAUUCGGAUUG-----------UCUGCUCUG .(((((((((...((((((((((.....)))))))))).......(((....)))))))...)))))........((((...-----------.....)))) ( -17.70) >DroYak_CAF1 69171 91 + 1 UUCAGUGGUCCUUUUUAGUUGACUUUCUGUUAACUAAACUUAUUAAAGUAUGCUUGAUAUUCACUGAUUCUGAUUCGGAUUG-----------UCUGCUCUG .(((((((.....((((((((((.....))))))))))..((((((.(....))))))).)))))))........((((...-----------.....)))) ( -19.30) >DroPer_CAF1 83708 102 + 1 CUUGGCUCAAGUUCUCAGUUGGCUUUCUGUUAACUAAACUUAUUAAAGUUUGUUUGACAUUCACUGAUUCAGAUUCAGAUUCUGAUGCUCAACUCUGCUCUU ........(((..(..(((((((....((((((.(((((((....))))))).)))))).........(((((.......))))).)).)))))..)..))) ( -21.50) >consensus UUCAGUUGUCCUUUUUAGUUGACUUUCUGUUAACUAAACUUAUUAAAGUAUGCUUGACAUUCACUGAUUCUGAUUCAGAUUG___________UCUGCUCUG ...(((........(((((((((.....)))))))))..........................((((.......))))..................)))... (-12.14 = -11.42 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:22 2006