Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,554,741 – 17,554,835 |
Length | 94 |
Max. P | 0.701451 |
Location | 17,554,741 – 17,554,835 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.48 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -13.69 |
Energy contribution | -12.97 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.25 |
Mean z-score | -1.32 |
Structure conservation index | 0.67 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17554741 94 - 20766785 -------------CUAGUUUUCGAA---GGGCAUGCAUUAGUUGCGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUCU -------------...........(---((((((.((((((((((((((.....)))).))))......((......))...))))))..)))))))............. ( -19.40) >DroVir_CAF1 85665 104 - 1 GACAUAUAUAUAUGUUAUGUUAGUU---GUGUAUGUAUUAGA-GAGGACAUAAUGUCCUGCAAAUUGUGCACAUUUUUCAAUUUAAUGAGGUGCU-UAUUUUGAA-UUUA .(((((((((..((......))..)---))))))))......-.(((((.....))))).((((.((.((((....((((......)))))))).-)).))))..-.... ( -20.90) >DroPse_CAF1 73934 97 - 1 -------------CUAGUUCCUGCAUAGAUGCAUGCAUUAGUCGGGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU -------------...(((((((.((.((((....)))).)))))))))..((((((.(((.....)))))))))....((((((..(((........)))))))))... ( -22.80) >DroWil_CAF1 103910 90 - 1 ----------------UUUUUGGGAGAGAUGUAUGUAUUAGCCAAGGACAUAAUGUCCUGCAAAUUGUGCACAUUUGUCAAUUUAAUGAGGUGCU-UAUUUUAAAUU--- ----------------...((((.(((..((((((.(((.((..(((((.....))))))).)))))))))..))).))))...((((((...))-)))).......--- ( -17.70) >DroAna_CAF1 63480 93 - 1 -------------CUCCUGCCUGC----AGGCAUGCAUUAGCCAAGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU -------------...((((.(((----.(((........))).(((((.....))))))))....)))).........((((((..(((........)))))))))... ( -19.80) >DroPer_CAF1 78922 97 - 1 -------------CUAGUUCCUGCAUAGAUGCAUGCAUUAGUCGGGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU -------------...(((((((.((.((((....)))).)))))))))..((((((.(((.....)))))))))....((((((..(((........)))))))))... ( -22.80) >consensus _____________CUAGUUCCUGCA___AUGCAUGCAUUAGUCGAGGACAUAAUGUCCUGCAAAUUGUAGACAUUUUUCAAUUUAAUGAGGUGCUUUACUCUAAAUUUUU ..............................((((.((((.((..(((((.....)))))))((((((.(((....)))))))))))))..))))................ (-13.69 = -12.97 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:20 2006