| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,541,277 – 17,541,376 |
| Length | 99 |
| Max. P | 0.924017 |
| Location | 17,541,277 – 17,541,376 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.77 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.38 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17541277 99 + 20766785 AGCGUGUACUUAAUCGCUUAAAGCAUUAGAAUUUGAAAUUGAAUAUCAUAAAGGAU----------AUUCAGAAGUGCGCGCUCCA--AAAGAACUUGCGAAAAA--------AGAAU-C .((((((((((....((.....))..............(((((((((......)))----------))))))))))))))))((((--(......))).))....--------.....-. ( -26.20) >DroPse_CAF1 59610 108 + 1 AGCGUGUACUUAAUCGCUUAAAGCAUUAGAAUUUGAAAUUGAAUAUCAUAAAGGAUACUCGUAUAUAUUCAAAAGUGCGAGGC---------AUCCAGCGAAAAAAAGGA---AGAACAC ...((((.(((..(((((..........((((((......)))).)).....((((.(((((((..........)))))))..---------)))))))))........)---)).)))) ( -21.60) >DroEre_CAF1 55570 99 + 1 AGCGUGUACUUAAUCGCUUAAAGCAUUAGAAUUUGAAAUUGAAUAUCAUAAAGGAU----------AUUCAGAAGUGCGCGCACCA--AAAGAACUGGCGAGAAA--------AGAAU-C .((((((((((....((.....))..............(((((((((......)))----------)))))))))))))))).(((--.......))).......--------.....-. ( -27.20) >DroYak_CAF1 50541 101 + 1 AGCGUGUACUUAAUCGCUUAAAGCAUUAGAAUUUGAAAUUGAAUAUCAUAAAGGAU----------AUUCAGAAGUGCGCGCUCGAAAAAAGAACUGCCGAGAAA--------AGAAU-C (((((((((((....((.....))..............(((((((((......)))----------)))))))))))))))))......................--------.....-. ( -26.10) >DroAna_CAF1 50269 103 + 1 AGCGUGUACUUAAUCGCUUAAAGCAUUAGAAUUUGAAAUUGAAUAUCAUAAAAGAU----------AUUCAAAAGUGCGGGCUCGA--GAACAAG--GCGAGAAA--GAAAGGAGAAA-G (((.(((((((....((.....))..............(((((((((......)))----------))))))))))))).)))...--.......--........--...........-. ( -22.50) >DroPer_CAF1 64496 108 + 1 AGCGUGUACUUAAUCGCUUAAAGCAUUAGAAUUUGAAAUUGAAUAUCAUAAAGGAUACUCGUAUAUAUUCAAAAGUGCGAGGC---------AUCCAGCGAAAAAAAGGA---AGAACAC ...((((.(((..(((((..........((((((......)))).)).....((((.(((((((..........)))))))..---------)))))))))........)---)).)))) ( -21.60) >consensus AGCGUGUACUUAAUCGCUUAAAGCAUUAGAAUUUGAAAUUGAAUAUCAUAAAGGAU__________AUUCAAAAGUGCGCGCUC_A__AAAGAACUAGCGAAAAA________AGAAU_C .((.(((((((....((.....))..............(((((((((......)))..........))))))))))))).))...................................... (-11.30 = -11.38 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:17 2006