Locus 545

Sequence ID 2R_DroMel_CAF1
Location 2,862,852 – 2,862,947
Length 95
Max. P 0.975465
window1016

overview

Window 6

Location 2,862,852 – 2,862,947
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.46
Mean single sequence MFE -25.88
Consensus MFE -14.90
Energy contribution -15.23
Covariance contribution 0.33
Combinations/Pair 1.09
Mean z-score -2.76
Structure conservation index 0.58
SVM decision value 1.75
SVM RNA-class probability 0.975465
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2862852 95 - 20766785
UAGGG---UUCAAAUAGAAAUUAAUGCCAAAGACAU----AUUACAUUUAUCUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA
..(((---(((.((((((....((((..........----....))))..))))))...))))))((((((((....))))))))................. ( -28.94)
>DroSec_CAF1 14485 95 - 1
UAGGG---UUUAAAUAGAAAUGAAUGCCAAAGACAU----AUUACAUUUAUCUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA
..(((---(((.((((((..((((((..........----....))))))))))))...))))))((((((((....))))))))................. ( -29.34)
>DroSim_CAF1 21180 95 - 1
UAGGG---UUUAAAUAGAAAUGAAUGCCAAAGACAU----AUUACAUUUAUCUAUUAUAGAGCCCGUUGGAGCGAAAGCUCCCACCUUUUCGAGUGACUCCA
..(((---(((.((((((..((((((..........----....))))))))))))...))))))((.(((((....))))).))................. ( -26.44)
>DroEre_CAF1 14058 92 - 1
UAAGG---UU---AUAAAAAUUAAGGCUAAGGACAA----AUGACAUUUAUUUAUUAUAGAGCCCGUUGGAGCGAAAGCUCCGACCUUUUCGAGUGACUCCA
...((---((---((.........((((...((.((----((((...)))))).))....)))).((((((((....))))))))........))))))... ( -27.10)
>DroYak_CAF1 16071 96 - 1
UAAGG---UU---AUCUAAAUAAAUGCCAAAGAUACAUAUAUUACGUUUAUUUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA
...((---((---((.((((((((((..................)))))))))).....(((...((((((((....))))))))...)))..))))))... ( -24.47)
>DroMoj_CAF1 15294 88 - 1
UAGCCCUAGGC------AAAU--AGUCUAAAUAUGU----AUU--UUACUUUGCUUUUAGAGCCUGUCGGCGCUAAGGCACCAACAUUUUCGAGCGACUCCA
..(((.(((((------..((--((((((((...((----(..--......))).))))))..))))..)).))).)))....................... ( -19.00)
>consensus
UAGGG___UU___AUAGAAAUGAAUGCCAAAGACAU____AUUACAUUUAUCUAUUAUAGAGCCCGUUGGGGCGAAAGCUCCGACCUUUUCGAGUGACUCCA
...........................................................(((...((((((((....))))))))...)))........... (-14.90 = -15.23 +   0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:24 2006