Locus 5448

Sequence ID 2R_DroMel_CAF1
Location 17,523,160 – 17,523,265
Length 105
Max. P 0.523110
window8695

overview

Window 5

Location 17,523,160 – 17,523,265
Length 105
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 70.30
Mean single sequence MFE -19.44
Consensus MFE -3.90
Energy contribution -3.66
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.68
Structure conservation index 0.20
SVM decision value -0.02
SVM RNA-class probability 0.523110
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17523160 105 + 20766785
GCAAACCAAAGCAGCAUGGUUAAUAUGAUAUA-----UUGUACAGUUUUGAUAUCUGUCCGAUAUAGAAAUCAUAUAUA---UUCUGCAAGAGAAACCUUCGAUAAUUGAGAG
((((((((........))))).((((((((((-----(((.((((.........)))).)))))))....))))))...---...)))......................... ( -18.50)
>DroSec_CAF1 29522 93 + 1
GCAAACCAAAACUGCAUGGUUAAUAUGAUAUAUUAUAUUGAACAGCUUCGAUA-----------------UCAUAUAUA---UUCUGCAAGGGAAACCUUUCAUAAUUGAGAC
((((((((........)))))......((((((.((((((((....)))))))-----------------).)))))).---...)))((((....))))(((....)))... ( -22.10)
>DroSim_CAF1 30814 93 + 1
GCAAACCAAAACUGCAUGGUUAAUAUGAUAUAUUAUAUUGUACAGCUUCGAUA-----------------UCAUAUAUA---UUCUUCAAGGGAAACCUUUCAUAAUUGAGAC
...(((((........)))))..((((((((((.((((((........)))))-----------------).)))))..---......((((....)))))))))........ ( -18.50)
>DroEre_CAF1 36946 97 + 1
CCAAACCAAAGCUACAUGGUUAACAUGAUAUAGUAGAU---AUCUGCUCGAUG-----------UGGAACUGAUAUAUACUUAUCUGCAAGGGAAACGUUUCGUAAUUGA--G
...(((((........)))))..((.(((((.....))---)))))((((((.-----------.(((((.((((......))))......(....))))))...)))))--) ( -18.50)
>DroYak_CAF1 31390 88 + 1
ACAAACCAAAGCUACAUGGUUAAUAUGAUAU--UAGAUCGUACAAUUUCGAUG-----------CAGAACUGAUAUAUA---AUCUGCAUGAGAAU-------UGAGUGA--G
...(((((........)))))..((((((..--...))))))((((((..(((-----------((((...........---.)))))))..))))-------)).....--. ( -19.60)
>consensus
GCAAACCAAAGCUGCAUGGUUAAUAUGAUAUA_UAGAUUGUACAGCUUCGAUA_____________GAA_UCAUAUAUA___UUCUGCAAGGGAAACCUUUCAUAAUUGAGAG
...(((((........)))))..............................................................(((.....)))................... ( -3.90 =  -3.66 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:09 2006