| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,500,508 – 17,500,601 |
| Length | 93 |
| Max. P | 0.996984 |
| Location | 17,500,508 – 17,500,601 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 73.33 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -16.18 |
| Energy contribution | -18.06 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.54 |
| SVM decision value | 2.78 |
| SVM RNA-class probability | 0.996984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17500508 93 - 20766785 AGAGCAUCGAGUAACUAUCGUAAGCCCAUUGUUG--CUGGAUAACAGGGCAGUGGGAAAAGUGG------------GCGGAAAAGCGGUUGGAAUGGGCGCUGGGUG ....((((.(((..((((..(((.(((((((((.--(((.....))))))))))))........------------((......))..)))..))))..))).)))) ( -28.80) >DroSec_CAF1 7203 93 - 1 AGAGCAUCGAGUAACCAUCGUAAGCCCAUUGUUG--CUGGAUAACAGGGCAAUGGGAAAAGUGG------------GCGGAAAAGCGGUUGGGAUGGGCGCUGGGUG ....((((.(((..(((((.(((.(((((((((.--(((.....))))))))))))........------------((......))..))).)))))..))).)))) ( -36.10) >DroSim_CAF1 7224 93 - 1 AGAGCAUCGAGUAACCAUCGUAAGCCCAUUGUUG--CUGGAUAACAGGGCAGUGGGAAAAGUGG------------GUGGAAAAGCGGUUGGGAUGGGCGUUGGGUG ....((((.(((..(((((.(((.(((((((((.--(((.....))))))))))))....((..------------.(....).))..))).)))))..))).)))) ( -28.70) >DroYak_CAF1 7401 105 - 1 AGAGCAUCGAGUAACCAACGUAAGCCCAUUGUUG--UUGGAUAGCAGGGCACUAGGAAAAUUGGGCGGAAAAGCGGGUGGAAAAGUGGUUAGGUUGGUAUCUGGGUG ....((((.((..((((((.(((((((..(((((--(...)))))))))).((((.....))))((......))..............))).))))))..)).)))) ( -28.30) >DroAna_CAF1 13655 81 - 1 ----CGUGCAGUACCCAUUGCAGACUCAUUGUUGGCCCGGAAAACGGG-------GAAAAGCGA------------UGGCAAGAGCGG---GGGUGGGGGUGGGGGG ----(.(.((.(.((((((.(.....(((((((..((((.....))))-------....)))))------------))((....)).)---.))))))).)).).). ( -26.80) >consensus AGAGCAUCGAGUAACCAUCGUAAGCCCAUUGUUG__CUGGAUAACAGGGCAGUGGGAAAAGUGG____________GCGGAAAAGCGGUUGGGAUGGGCGCUGGGUG ....((((.(((..(((((.(((.(((((((((...(((.....))))))))))))....................((......))..))).)))))..))).)))) (-16.18 = -18.06 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:06 2006