| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,488,375 – 17,488,495 |
| Length | 120 |
| Max. P | 0.771845 |
| Location | 17,488,375 – 17,488,495 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.87 |
| Mean single sequence MFE | -33.80 |
| Consensus MFE | -24.96 |
| Energy contribution | -24.30 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17488375 120 + 20766785 UGACGCGGAGAAGUGACCUGAAAAUGGGAGACCUCCUGCGAGAAUUCAGUCAUCUGGAGCUGGUCAAAAGGGACUUUCAUUUGCAGGUAGCAUUUUUCUGGUAAAAUAUACGAUAUAAAA ..((.(((((((((((((((.(((((..((.(((..(((.((..(((((....))))).)).).))..)))..))..))))).)))))..)))))))))))).................. ( -38.40) >DroSim_CAF1 28793 117 + 1 UGACCCGGAGAAGUGACCUCAAAAUGGGAGACCUCCUGCGGGAAUUCAGUCAUCUGGAGCUGGUCAAAAGGGACUUUCACUUGCAGGUAGCAUUUUUCUAGUAAAAUAUA---UUUAAUA ......(((((((((..........((....)).((((((((..(((((....)))))(..((((......))))..).))))))))...)))))))))...........---....... ( -32.50) >DroYak_CAF1 24688 117 + 1 UCACCCGGAGGAGUGACCUCCAAAUAGGAUACCUCCUGCGGGAAUUCAGUCAUCUGGAAUUGGUCAAAAGGAAAUUUCACUUGAAGGUAACACAUUUCUAGCCAAAUAUU---UUUGAAA ...((((.(((((((.(((......))).)).))))).))))..((((((((..(((((((..((....)).)))))))..))).(((............))).......---.))))). ( -30.50) >consensus UGACCCGGAGAAGUGACCUCAAAAUGGGAGACCUCCUGCGGGAAUUCAGUCAUCUGGAGCUGGUCAAAAGGGACUUUCACUUGCAGGUAGCAUUUUUCUAGUAAAAUAUA___UUUAAAA ......(((((((((((((..((.((((((.(((..(((.((..(((((....))))).)).).))..)))..)))))).))..))))..)))))))))..................... (-24.96 = -24.30 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:45 2006