Locus 5431

Sequence ID 2R_DroMel_CAF1
Location 17,486,515 – 17,486,631
Length 116
Max. P 0.669497
window8663

overview

Window 3

Location 17,486,515 – 17,486,631
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 79.66
Mean single sequence MFE -40.57
Consensus MFE -23.78
Energy contribution -24.34
Covariance contribution 0.56
Combinations/Pair 1.32
Mean z-score -1.81
Structure conservation index 0.59
SVM decision value 0.29
SVM RNA-class probability 0.669497
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17486515 116 + 20766785
AGAUCCUUCUGGCUAAUCGAAGGGUUUUCAGAUGCAUGGCGGCUACGGAACGCAGAGCUUUCCAUUUCUUCCGGGCUUUCCUACCAUGAAGAGCGUUUAUGGCCAGAUGGAUUACC
.(((((.(((((((((((....)))....((((((((((.((((.(........)))))..)))).(((((..((........))..))))))))))).)))))))).)))))... ( -39.10)
>DroSec_CAF1 14617 116 + 1
AGAUCCUUCUGGCUAAUCGAAGGGUUUUCAGGUGCAUGUCGGCUACGGACCGCAAGGCUUUCCAUUUCUUUCGGGCUUGCCGACCAUGAAGAGCGUUUAUGGCCAGAUGGAUUACC
.(((((.((((((((...(((.(.(((((((((.(.((.((((....).))))).(((..(((.........)))...))))))).)))))).).))).)))))))).)))))... ( -43.60)
>DroSim_CAF1 26748 116 + 1
AGAUCCUUCUGGCUAAUCGAAGGGUUUUCAGGUGCAUGGCGGCUACGGACCGCAAGGUUUUCCAUUUUUUUCGCGCUUUCCGACCAUGAAGUGCGUUUAUGGCUAGAUGGAUUGCC
.(((((.(((((((((((....))).....((.((...(((((....).))))...))...))........((((((((........))))))))....)))))))).)))))... ( -40.90)
>DroEre_CAF1 17216 116 + 1
AGAUCCUCUUAGCUAUUUGAACGGUUUUCAGGUGCAUGGAGGCUACGGAGCGCAGGGCUUUCCAUUUAUUUUGGGCCUUCCUUCCAUGAAGGGCGUUUAUUGCCAGGUGGAUUACC
.(((((.(((.((....((((((.((((((((.....((((((...(((((.....)))))(((.......)))))))))...)).)))))).))))))..)).))).)))))... ( -39.30)
>DroYak_CAF1 22822 116 + 1
AGAUCCUUCUGGCUAAUCGAAGGGUUUGCAGGUGCAUAGAGGCUACGGAGCGCAAGGAUUUCCACUUCUUUUGGGCCUUCCUGCCAUGAAGGGCGUUUAUGGCCAGAUGGAUUACC
.(((((.((((((.((((....))))........((((((.(((..(((((....)...)))).((((.....(((......)))..))))))).)))))))))))).)))))... ( -41.50)
>DroAna_CAF1 17375 116 + 1
AGAUUCUCCUGGCUAGCUGAAAUGUUUCCAGGUGCAUUGCAGCUAUGAAUCGGAGGGCCUUCACUCCUUUCUUGUCCUUCCGGUUGUGCAGACCCUCUAGCGCCAGGUGCACGGCC
.....(.((((((((((((.(((((........))))).))))))......((((((.((.(((.((..............))..))).)).))))))...)))))).)....... ( -39.04)
>consensus
AGAUCCUUCUGGCUAAUCGAAGGGUUUUCAGGUGCAUGGCGGCUACGGACCGCAAGGCUUUCCAUUUCUUUCGGGCCUUCCGACCAUGAAGAGCGUUUAUGGCCAGAUGGAUUACC
.(((((.((((((((...(((.(.((((((...((......))...((...(.((((((..............)))))).)..)).)))))).).))).)))))))).)))))... (-23.78 = -24.34 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:38 2006